Gene : Seita.7G001400 S. italica v2.2
Defline:  (1 of 2) PTHR31576:SF2 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B Genomic Order:  14
Name:  ? Seita.7G001400 Secondary Identifier:  ? PAC:32705471
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G001400 0.5kb upstream 0.5kb upstream 5823 true scaffold_7: 291279-297101 Setaria italica
Seita.7G001400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 296602-297101 Setaria italica
Seita.7G001400 0.5kb downstream 0.5kb downstream 5823 true scaffold_7: 290779-296601 Setaria italica
Seita.7G001400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 290779-291278 Setaria italica
Seita.7G001400 1.0kb upstream 1.0kb upstream 6323 true scaffold_7: 291279-297601 Setaria italica
Seita.7G001400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 296602-297601 Setaria italica
Seita.7G001400 1.0kb downstream 1.0kb downstream 6323 true scaffold_7: 290279-296601 Setaria italica
Seita.7G001400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 290279-291278 Setaria italica
Seita.7G001400 2.0kb upstream 2.0kb upstream 7323 true scaffold_7: 291279-298601 Setaria italica
Seita.7G001400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 296602-298601 Setaria italica
Seita.7G001400 2.0kb downstream 2.0kb downstream 7323 true scaffold_7: 289279-296601 Setaria italica
Seita.7G001400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 289279-291278 Setaria italica
Seita.7G001400 5.0kb upstream 5.0kb upstream 10323 true scaffold_7: 291279-301601 Setaria italica
Seita.7G001400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 296602-301601 Setaria italica
Seita.7G001400 5.0kb downstream 5.0kb downstream 10323 true scaffold_7: 286279-296601 Setaria italica
Seita.7G001400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 286279-291278 Setaria italica
Seita.7G001400 10.0kb upstream 10.0kb upstream 15323 true scaffold_7: 291279-306601 Setaria italica
Seita.7G001400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 296602-306601 Setaria italica
Seita.7G001400 10.0kb downstream 10.0kb downstream 15323 true scaffold_7: 281279-296601 Setaria italica
Seita.7G001400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 281279-291278 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196702 5267 Panicoideae View MSA
124588651 5269 Grass View MSA
122050673 5273 Angiosperm View MSA
121345414 5274 Embryophyte View MSA
123427215 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.702       Low
cufflinks 1.542        
cufflinks 3.122       High
cufflinks 2.679       High
cufflinks 2.7       High
cufflinks 1.631        
cufflinks 0.844       Low
cufflinks 2.015        
cufflinks 1.479        
cufflinks 0.82       Low
cufflinks 1.147        
cufflinks 1.392        
cufflinks 1.307        
cufflinks 2.763       High
cufflinks 1.287        
cufflinks 1.104        
cufflinks 1.457        
cufflinks 0.977        
cufflinks 1.362        
cufflinks 1.179        

0 Strain