Gene : Seita.7G005500 S. italica v2.2
Defline:  (1 of 1) PTHR13377//PTHR13377:SF5 - PLACENTAL PROTEIN 6 Genomic Order:  55
Name:  ? Seita.7G005500 Secondary Identifier:  ? PAC:32702740
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G005500 0.5kb upstream 0.5kb upstream 3779 true scaffold_7: 1024452-1028230 Setaria italica
Seita.7G005500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 1027731-1028230 Setaria italica
Seita.7G005500 0.5kb downstream 0.5kb downstream 3779 true scaffold_7: 1023952-1027730 Setaria italica
Seita.7G005500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 1023952-1024451 Setaria italica
Seita.7G005500 1.0kb upstream 1.0kb upstream 4279 true scaffold_7: 1024452-1028730 Setaria italica
Seita.7G005500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 1027731-1028730 Setaria italica
Seita.7G005500 1.0kb downstream 1.0kb downstream 4279 true scaffold_7: 1023452-1027730 Setaria italica
Seita.7G005500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 1023452-1024451 Setaria italica
Seita.7G005500 2.0kb upstream 2.0kb upstream 5279 true scaffold_7: 1024452-1029730 Setaria italica
Seita.7G005500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 1027731-1029730 Setaria italica
Seita.7G005500 2.0kb downstream 2.0kb downstream 5279 true scaffold_7: 1022452-1027730 Setaria italica
Seita.7G005500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 1022452-1024451 Setaria italica
Seita.7G005500 5.0kb upstream 5.0kb upstream 8279 true scaffold_7: 1024452-1032730 Setaria italica
Seita.7G005500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 1027731-1032730 Setaria italica
Seita.7G005500 5.0kb downstream 5.0kb downstream 8279 true scaffold_7: 1019452-1027730 Setaria italica
Seita.7G005500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 1019452-1024451 Setaria italica
Seita.7G005500 10.0kb upstream 10.0kb upstream 13279 true scaffold_7: 1024452-1037730 Setaria italica
Seita.7G005500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 1027731-1037730 Setaria italica
Seita.7G005500 10.0kb downstream 10.0kb downstream 13279 true scaffold_7: 1014452-1027730 Setaria italica
Seita.7G005500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 1014452-1024451 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122005802 5273 Angiosperm View MSA
122180297 5267 Panicoideae View MSA
124576832 5269 Grass View MSA
121275940 5274 Embryophyte View MSA
123314254 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.693     High  
cufflinks 44.676     High High
cufflinks 9.806       Low
cufflinks 9.521       Low
cufflinks 11.204     High Low
cufflinks 43.015     High  
cufflinks 25.04     High  
cufflinks 20.094     High  
cufflinks 21.9     High  
cufflinks 27.407     High  
cufflinks 38.981     High  
cufflinks 32.018     High  
cufflinks 48.694     High High
cufflinks 15.258     High  
cufflinks 55.233     High High
cufflinks 12.956     High  
cufflinks 36.916     High  
cufflinks 10.181       Low
cufflinks 10.972       Low
cufflinks 49.624     High High

0 Strain