Gene : Seita.7G007900 S. italica v2.2
Defline:  (1 of 1) 3.5.3.1 - Arginase / Canavanase Genomic Order:  79
Name:  ? Seita.7G007900 Secondary Identifier:  ? PAC:32702749
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARGASEDEG-PWY Setaria italica pathologic  
Sitalica ARG-PRO-PWY Setaria italica pathologic  
Sitalica CITRULBIO-PWY Setaria italica pathologic  
Sitalica PWY-4984 Setaria italica pathologic  
Sitalica PWY-6922 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G007900 0.5kb upstream 0.5kb upstream 4522 true scaffold_7: 1307162-1311683 Setaria italica
Seita.7G007900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 1307162-1307661 Setaria italica
Seita.7G007900 0.5kb downstream 0.5kb downstream 4522 true scaffold_7: 1307662-1312183 Setaria italica
Seita.7G007900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 1311684-1312183 Setaria italica
Seita.7G007900 1.0kb upstream 1.0kb upstream 5022 true scaffold_7: 1306662-1311683 Setaria italica
Seita.7G007900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 1306662-1307661 Setaria italica
Seita.7G007900 1.0kb downstream 1.0kb downstream 5022 true scaffold_7: 1307662-1312683 Setaria italica
Seita.7G007900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 1311684-1312683 Setaria italica
Seita.7G007900 2.0kb upstream 2.0kb upstream 6022 true scaffold_7: 1305662-1311683 Setaria italica
Seita.7G007900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 1305662-1307661 Setaria italica
Seita.7G007900 2.0kb downstream 2.0kb downstream 6022 true scaffold_7: 1307662-1313683 Setaria italica
Seita.7G007900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 1311684-1313683 Setaria italica
Seita.7G007900 5.0kb upstream 5.0kb upstream 9022 true scaffold_7: 1302662-1311683 Setaria italica
Seita.7G007900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 1302662-1307661 Setaria italica
Seita.7G007900 5.0kb downstream 5.0kb downstream 9022 true scaffold_7: 1307662-1316683 Setaria italica
Seita.7G007900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 1311684-1316683 Setaria italica
Seita.7G007900 10.0kb upstream 10.0kb upstream 14022 true scaffold_7: 1297662-1311683 Setaria italica
Seita.7G007900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 1297662-1307661 Setaria italica
Seita.7G007900 10.0kb downstream 10.0kb downstream 14022 true scaffold_7: 1307662-1321683 Setaria italica
Seita.7G007900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 1311684-1321683 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180298 5267 Panicoideae View MSA
124571096 5269 Grass View MSA
122046910 5273 Angiosperm View MSA
121347074 5274 Embryophyte View MSA
123428330 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.11        
cufflinks 12.883        
cufflinks 10.018        
cufflinks 16.397     High High
cufflinks 10.602        
cufflinks 12.163        
cufflinks 6.985        
cufflinks 9.73        
cufflinks 6.417        
cufflinks 7.816        
cufflinks 7.574        
cufflinks 6.45        
cufflinks 4.544       Low
cufflinks 11.208        
cufflinks 3.378       Low
cufflinks 8.694        
cufflinks 2.763       Low
cufflinks 17.355     High High
cufflinks 15.37     High High
cufflinks 2.803       Low

0 Strain