Gene : Seita.7G006400 S. italica v2.2
Defline:  (1 of 2) KOG4650 - Predicted steroid reductase Genomic Order:  64
Name:  ? Seita.7G006400 Secondary Identifier:  ? PAC:32701961
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G006400 0.5kb upstream 0.5kb upstream 2013 true scaffold_7: 1144174-1146186 Setaria italica
Seita.7G006400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 1144174-1144673 Setaria italica
Seita.7G006400 0.5kb downstream 0.5kb downstream 2013 true scaffold_7: 1144674-1146686 Setaria italica
Seita.7G006400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 1146187-1146686 Setaria italica
Seita.7G006400 1.0kb upstream 1.0kb upstream 2513 true scaffold_7: 1143674-1146186 Setaria italica
Seita.7G006400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 1143674-1144673 Setaria italica
Seita.7G006400 1.0kb downstream 1.0kb downstream 2513 true scaffold_7: 1144674-1147186 Setaria italica
Seita.7G006400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 1146187-1147186 Setaria italica
Seita.7G006400 2.0kb upstream 2.0kb upstream 3513 true scaffold_7: 1142674-1146186 Setaria italica
Seita.7G006400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 1142674-1144673 Setaria italica
Seita.7G006400 2.0kb downstream 2.0kb downstream 3513 true scaffold_7: 1144674-1148186 Setaria italica
Seita.7G006400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 1146187-1148186 Setaria italica
Seita.7G006400 5.0kb upstream 5.0kb upstream 6513 true scaffold_7: 1139674-1146186 Setaria italica
Seita.7G006400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 1139674-1144673 Setaria italica
Seita.7G006400 5.0kb downstream 5.0kb downstream 6513 true scaffold_7: 1144674-1151186 Setaria italica
Seita.7G006400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 1146187-1151186 Setaria italica
Seita.7G006400 10.0kb upstream 10.0kb upstream 11513 true scaffold_7: 1134674-1146186 Setaria italica
Seita.7G006400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 1134674-1144673 Setaria italica
Seita.7G006400 10.0kb downstream 10.0kb downstream 11513 true scaffold_7: 1144674-1156186 Setaria italica
Seita.7G006400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 1146187-1156186 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189141 5267 Panicoideae View MSA
124580430 5269 Grass View MSA
122046311 5273 Angiosperm View MSA
123429173 5275 Viridiplantae View MSA
121346898 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.471        
cufflinks 3.845        
cufflinks 0.306       Low
cufflinks 0.048     Low Low
cufflinks 0.33       Low
cufflinks 2.947        
cufflinks 1.918        
cufflinks 2.708        
cufflinks 2.799        
cufflinks 17.33     High  
cufflinks 5.338        
cufflinks 20.661     High  
cufflinks 36.493     High High
cufflinks 0.955        
cufflinks 49.292     High High
cufflinks 0.991        
cufflinks 43.038     High High
cufflinks 0.511        
cufflinks 0.069     Low Low
cufflinks 63.162     High High

0 Strain