Gene : Seita.7G028700 S. italica v2.2
Defline:  (1 of 2) PTHR11254:SF73 - E3 UBIQUITIN-PROTEIN LIGASE TRIP12 Genomic Order:  287
Name:  ? Seita.7G028700 Secondary Identifier:  ? PAC:32705404
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G028700 0.5kb upstream 0.5kb upstream 14939 true scaffold_7: 7658944-7673882 Setaria italica
Seita.7G028700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 7673383-7673882 Setaria italica
Seita.7G028700 0.5kb downstream 0.5kb downstream 14939 true scaffold_7: 7658444-7673382 Setaria italica
Seita.7G028700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 7658444-7658943 Setaria italica
Seita.7G028700 1.0kb upstream 1.0kb upstream 15439 true scaffold_7: 7658944-7674382 Setaria italica
Seita.7G028700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 7673383-7674382 Setaria italica
Seita.7G028700 1.0kb downstream 1.0kb downstream 15439 true scaffold_7: 7657944-7673382 Setaria italica
Seita.7G028700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 7657944-7658943 Setaria italica
Seita.7G028700 2.0kb upstream 2.0kb upstream 16439 true scaffold_7: 7658944-7675382 Setaria italica
Seita.7G028700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 7673383-7675382 Setaria italica
Seita.7G028700 2.0kb downstream 2.0kb downstream 16439 true scaffold_7: 7656944-7673382 Setaria italica
Seita.7G028700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 7656944-7658943 Setaria italica
Seita.7G028700 5.0kb upstream 5.0kb upstream 19439 true scaffold_7: 7658944-7678382 Setaria italica
Seita.7G028700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 7673383-7678382 Setaria italica
Seita.7G028700 5.0kb downstream 5.0kb downstream 19439 true scaffold_7: 7653944-7673382 Setaria italica
Seita.7G028700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 7653944-7658943 Setaria italica
Seita.7G028700 10.0kb upstream 10.0kb upstream 24439 true scaffold_7: 7658944-7683382 Setaria italica
Seita.7G028700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 7673383-7683382 Setaria italica
Seita.7G028700 10.0kb downstream 10.0kb downstream 24439 true scaffold_7: 7648944-7673382 Setaria italica
Seita.7G028700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 7648944-7658943 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184025 5267 Panicoideae View MSA
124585702 5269 Grass View MSA
122042659 5273 Angiosperm View MSA
121345958 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.183        
cufflinks 4.218        
cufflinks 5.295       High
cufflinks 4.109        
cufflinks 3.594        
cufflinks 4.27        
cufflinks 3.66        
cufflinks 2.709       Low
cufflinks 3.389        
cufflinks 1.952       Low
cufflinks 3.723        
cufflinks 3.242        
cufflinks 3.721        
cufflinks 4.042        
cufflinks 4.046        
cufflinks 4.326        
cufflinks 2.86       Low
cufflinks 5.962       High
cufflinks 3.307        
cufflinks 3.143        

0 Strain