Gene : Seita.7G028200 S. italica v2.2
Defline:  (1 of 1) PTHR10285:SF53 - URIDINE KINASE Genomic Order:  282
Name:  ? Seita.7G028200 Secondary Identifier:  ? PAC:32704613
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7193 Setaria italica pathologic  
Sitalica PWY-7196 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G028200 0.5kb upstream 0.5kb upstream 23292 true scaffold_7: 7206951-7230242 Setaria italica
Seita.7G028200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 7206951-7207450 Setaria italica
Seita.7G028200 0.5kb downstream 0.5kb downstream 23292 true scaffold_7: 7207451-7230742 Setaria italica
Seita.7G028200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 7230243-7230742 Setaria italica
Seita.7G028200 1.0kb upstream 1.0kb upstream 23792 true scaffold_7: 7206451-7230242 Setaria italica
Seita.7G028200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 7206451-7207450 Setaria italica
Seita.7G028200 1.0kb downstream 1.0kb downstream 23792 true scaffold_7: 7207451-7231242 Setaria italica
Seita.7G028200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 7230243-7231242 Setaria italica
Seita.7G028200 2.0kb upstream 2.0kb upstream 24792 true scaffold_7: 7205451-7230242 Setaria italica
Seita.7G028200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 7205451-7207450 Setaria italica
Seita.7G028200 2.0kb downstream 2.0kb downstream 24792 true scaffold_7: 7207451-7232242 Setaria italica
Seita.7G028200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 7230243-7232242 Setaria italica
Seita.7G028200 5.0kb upstream 5.0kb upstream 27792 true scaffold_7: 7202451-7230242 Setaria italica
Seita.7G028200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 7202451-7207450 Setaria italica
Seita.7G028200 5.0kb downstream 5.0kb downstream 27792 true scaffold_7: 7207451-7235242 Setaria italica
Seita.7G028200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 7230243-7235242 Setaria italica
Seita.7G028200 10.0kb upstream 10.0kb upstream 32792 true scaffold_7: 7197451-7230242 Setaria italica
Seita.7G028200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 7197451-7207450 Setaria italica
Seita.7G028200 10.0kb downstream 10.0kb downstream 32792 true scaffold_7: 7207451-7240242 Setaria italica
Seita.7G028200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 7230243-7240242 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184913 5267 Panicoideae View MSA
124588331 5269 Grass View MSA
122044880 5273 Angiosperm View MSA
121351427 5274 Embryophyte View MSA
123427517 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.407        
cufflinks 1.919        
cufflinks 2.566        
cufflinks 1.771        
cufflinks 1.085       Low
cufflinks 1.947        
cufflinks 1.575        
cufflinks 1.835        
cufflinks 1.118       Low
cufflinks 1.566        
cufflinks 2.063        
cufflinks 2.573        
cufflinks 2.946       High
cufflinks 2.335        
cufflinks 2.378        
cufflinks 2.13        
cufflinks 1.724        
cufflinks 3.196       High
cufflinks 2.04        
cufflinks 1.799        

0 Strain