Gene : Seita.6G213900 S. italica v2.2
Defline:  (1 of 2) PTHR12919:SF20 - 28S RIBOSOMAL PROTEIN S16, MITOCHONDRIAL Genomic Order:  2139
Name:  ? Seita.6G213900 Secondary Identifier:  ? PAC:32699266
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G213900 0.5kb upstream 0.5kb upstream 3059 true scaffold_6: 33101227-33104285 Setaria italica
Seita.6G213900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 33101227-33101726 Setaria italica
Seita.6G213900 0.5kb downstream 0.5kb downstream 3059 true scaffold_6: 33101727-33104785 Setaria italica
Seita.6G213900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 33104286-33104785 Setaria italica
Seita.6G213900 1.0kb upstream 1.0kb upstream 3559 true scaffold_6: 33100727-33104285 Setaria italica
Seita.6G213900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 33100727-33101726 Setaria italica
Seita.6G213900 1.0kb downstream 1.0kb downstream 3559 true scaffold_6: 33101727-33105285 Setaria italica
Seita.6G213900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 33104286-33105285 Setaria italica
Seita.6G213900 2.0kb upstream 2.0kb upstream 4559 true scaffold_6: 33099727-33104285 Setaria italica
Seita.6G213900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 33099727-33101726 Setaria italica
Seita.6G213900 2.0kb downstream 2.0kb downstream 4559 true scaffold_6: 33101727-33106285 Setaria italica
Seita.6G213900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 33104286-33106285 Setaria italica
Seita.6G213900 5.0kb upstream 5.0kb upstream 7559 true scaffold_6: 33096727-33104285 Setaria italica
Seita.6G213900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 33096727-33101726 Setaria italica
Seita.6G213900 5.0kb downstream 5.0kb downstream 7559 true scaffold_6: 33101727-33109285 Setaria italica
Seita.6G213900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 33104286-33109285 Setaria italica
Seita.6G213900 10.0kb upstream 10.0kb upstream 12559 true scaffold_6: 33091727-33104285 Setaria italica
Seita.6G213900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 33091727-33101726 Setaria italica
Seita.6G213900 10.0kb downstream 10.0kb downstream 12559 true scaffold_6: 33101727-33114285 Setaria italica
Seita.6G213900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 33104286-33114285 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177218 5267 Panicoideae View MSA
124570397 5269 Grass View MSA
122051162 5273 Angiosperm View MSA
121348917 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.412        
cufflinks 1.0        
cufflinks 0.984        
cufflinks 0.646       Low
cufflinks 0.626       Low
cufflinks 1.132        
cufflinks 0.937        
cufflinks 1.37        
cufflinks 1.245        
cufflinks 2.418       High
cufflinks 1.091        
cufflinks 1.726        
cufflinks 0.947        
cufflinks 1.517        
cufflinks 1.454        
cufflinks 1.372        
cufflinks 1.956       High
cufflinks 1.553        
cufflinks 0.494       Low
cufflinks 1.889       High

0 Strain