Gene : Seita.6G212000 S. italica v2.2
Defline:  (1 of 15) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  2120
Name:  ? Seita.6G212000 Secondary Identifier:  ? PAC:32701335
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G212000 0.5kb upstream 0.5kb upstream 7945 true scaffold_6: 32959680-32967624 Setaria italica
Seita.6G212000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 32959680-32960179 Setaria italica
Seita.6G212000 0.5kb downstream 0.5kb downstream 7945 true scaffold_6: 32960180-32968124 Setaria italica
Seita.6G212000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 32967625-32968124 Setaria italica
Seita.6G212000 1.0kb upstream 1.0kb upstream 8445 true scaffold_6: 32959180-32967624 Setaria italica
Seita.6G212000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 32959180-32960179 Setaria italica
Seita.6G212000 1.0kb downstream 1.0kb downstream 8445 true scaffold_6: 32960180-32968624 Setaria italica
Seita.6G212000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 32967625-32968624 Setaria italica
Seita.6G212000 2.0kb upstream 2.0kb upstream 9445 true scaffold_6: 32958180-32967624 Setaria italica
Seita.6G212000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 32958180-32960179 Setaria italica
Seita.6G212000 2.0kb downstream 2.0kb downstream 9445 true scaffold_6: 32960180-32969624 Setaria italica
Seita.6G212000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 32967625-32969624 Setaria italica
Seita.6G212000 5.0kb upstream 5.0kb upstream 12445 true scaffold_6: 32955180-32967624 Setaria italica
Seita.6G212000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 32955180-32960179 Setaria italica
Seita.6G212000 5.0kb downstream 5.0kb downstream 12445 true scaffold_6: 32960180-32972624 Setaria italica
Seita.6G212000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 32967625-32972624 Setaria italica
Seita.6G212000 10.0kb upstream 10.0kb upstream 17445 true scaffold_6: 32950180-32967624 Setaria italica
Seita.6G212000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 32950180-32960179 Setaria italica
Seita.6G212000 10.0kb downstream 10.0kb downstream 17445 true scaffold_6: 32960180-32977624 Setaria italica
Seita.6G212000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 32967625-32977624 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187321 5267 Panicoideae View MSA
124574948 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.911     High High
cufflinks 94.594     High High
cufflinks 21.779     High  
cufflinks 22.058     High  
cufflinks 22.155     High  
cufflinks 80.168     High High
cufflinks 31.534     High  
cufflinks 20.94     High  
cufflinks 23.951     High  
cufflinks 27.374     High  
cufflinks 45.161     High  
cufflinks 30.134     High  
cufflinks 51.53     High  
cufflinks 20.905     High  
cufflinks 47.812     High  
cufflinks 33.308     High  
cufflinks 26.17     High  
cufflinks 37.383     High  
cufflinks 18.438     High Low
cufflinks 27.672     High  

0 Strain