Gene : Seita.6G215200 S. italica v2.2
Genomic Order:  2152 Name:  ? Seita.6G215200
Secondary Identifier:  ? PAC:32700883
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G215200 0.5kb upstream 0.5kb upstream 3453 true scaffold_6: 33182242-33185694 Setaria italica
Seita.6G215200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 33185195-33185694 Setaria italica
Seita.6G215200 0.5kb downstream 0.5kb downstream 3453 true scaffold_6: 33181742-33185194 Setaria italica
Seita.6G215200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 33181742-33182241 Setaria italica
Seita.6G215200 1.0kb upstream 1.0kb upstream 3953 true scaffold_6: 33182242-33186194 Setaria italica
Seita.6G215200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 33185195-33186194 Setaria italica
Seita.6G215200 1.0kb downstream 1.0kb downstream 3953 true scaffold_6: 33181242-33185194 Setaria italica
Seita.6G215200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 33181242-33182241 Setaria italica
Seita.6G215200 2.0kb upstream 2.0kb upstream 4953 true scaffold_6: 33182242-33187194 Setaria italica
Seita.6G215200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 33185195-33187194 Setaria italica
Seita.6G215200 2.0kb downstream 2.0kb downstream 4953 true scaffold_6: 33180242-33185194 Setaria italica
Seita.6G215200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 33180242-33182241 Setaria italica
Seita.6G215200 5.0kb upstream 5.0kb upstream 7953 true scaffold_6: 33182242-33190194 Setaria italica
Seita.6G215200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 33185195-33190194 Setaria italica
Seita.6G215200 5.0kb downstream 5.0kb downstream 7953 true scaffold_6: 33177242-33185194 Setaria italica
Seita.6G215200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 33177242-33182241 Setaria italica
Seita.6G215200 10.0kb upstream 10.0kb upstream 12953 true scaffold_6: 33182242-33195194 Setaria italica
Seita.6G215200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 33185195-33195194 Setaria italica
Seita.6G215200 10.0kb downstream 10.0kb downstream 12953 true scaffold_6: 33172242-33185194 Setaria italica
Seita.6G215200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 33172242-33182241 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122054486 5267 Panicoideae Singleton cluster - no MSA
124354311 5269 Grass Singleton cluster - no MSA
122049706 5273 Angiosperm View MSA
121311553 5274 Embryophyte View MSA
123427523 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.385        
cufflinks 0.624       High
cufflinks 0.203        
cufflinks 0.143       Low
cufflinks 0.189       Low
cufflinks 0.574       High
cufflinks 0.275        
cufflinks 0.281        
cufflinks 0.228        
cufflinks 0.557       High
cufflinks 0.245        
cufflinks 0.464        
cufflinks 0.268        
cufflinks 0.176       Low
cufflinks 0.311        
cufflinks 0.337        
cufflinks 0.408        
cufflinks 0.695       High
cufflinks 0.138       Low
cufflinks 0.338        

0 Strain