Gene : Seita.6G220500 S. italica v2.2
Defline:  (1 of 1) PTHR12608:SF4 - GDT1-LIKE PROTEIN 3 Genomic Order:  2205
Name:  ? Seita.6G220500 Secondary Identifier:  ? PAC:32701297
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G220500 0.5kb upstream 0.5kb upstream 3554 true scaffold_6: 33536023-33539576 Setaria italica
Seita.6G220500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 33539077-33539576 Setaria italica
Seita.6G220500 0.5kb downstream 0.5kb downstream 3554 true scaffold_6: 33535523-33539076 Setaria italica
Seita.6G220500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 33535523-33536022 Setaria italica
Seita.6G220500 1.0kb upstream 1.0kb upstream 4054 true scaffold_6: 33536023-33540076 Setaria italica
Seita.6G220500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 33539077-33540076 Setaria italica
Seita.6G220500 1.0kb downstream 1.0kb downstream 4054 true scaffold_6: 33535023-33539076 Setaria italica
Seita.6G220500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 33535023-33536022 Setaria italica
Seita.6G220500 2.0kb upstream 2.0kb upstream 5054 true scaffold_6: 33536023-33541076 Setaria italica
Seita.6G220500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 33539077-33541076 Setaria italica
Seita.6G220500 2.0kb downstream 2.0kb downstream 5054 true scaffold_6: 33534023-33539076 Setaria italica
Seita.6G220500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 33534023-33536022 Setaria italica
Seita.6G220500 5.0kb upstream 5.0kb upstream 8054 true scaffold_6: 33536023-33544076 Setaria italica
Seita.6G220500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 33539077-33544076 Setaria italica
Seita.6G220500 5.0kb downstream 5.0kb downstream 8054 true scaffold_6: 33531023-33539076 Setaria italica
Seita.6G220500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 33531023-33536022 Setaria italica
Seita.6G220500 10.0kb upstream 10.0kb upstream 13054 true scaffold_6: 33536023-33549076 Setaria italica
Seita.6G220500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 33539077-33549076 Setaria italica
Seita.6G220500 10.0kb downstream 10.0kb downstream 13054 true scaffold_6: 33526023-33539076 Setaria italica
Seita.6G220500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 33526023-33536022 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188106 5267 Panicoideae View MSA
124573155 5269 Grass View MSA
122047998 5273 Angiosperm View MSA
121345967 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.087        
cufflinks 4.087        
cufflinks 0.381       Low
cufflinks 0.482       Low
cufflinks 1.156        
cufflinks 4.302        
cufflinks 3.163        
cufflinks 3.941        
cufflinks 2.858        
cufflinks 12.32       High
cufflinks 7.13       High
cufflinks 4.152        
cufflinks 3.344        
cufflinks 1.615        
cufflinks 5.856        
cufflinks 1.248        
cufflinks 4.355        
cufflinks 0.822       Low
cufflinks 0.429       Low
cufflinks 6.082        

0 Strain