Gene : Seita.6G222800 S. italica v2.2
Defline:  (1 of 1) PTHR19321:SF3 - 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 8 Genomic Order:  2228
Name:  ? Seita.6G222800 Secondary Identifier:  ? PAC:32700678
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G222800 0.5kb upstream 0.5kb upstream 5621 true scaffold_6: 33697452-33703072 Setaria italica
Seita.6G222800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 33697452-33697951 Setaria italica
Seita.6G222800 0.5kb downstream 0.5kb downstream 5621 true scaffold_6: 33697952-33703572 Setaria italica
Seita.6G222800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 33703073-33703572 Setaria italica
Seita.6G222800 1.0kb upstream 1.0kb upstream 6121 true scaffold_6: 33696952-33703072 Setaria italica
Seita.6G222800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 33696952-33697951 Setaria italica
Seita.6G222800 1.0kb downstream 1.0kb downstream 6121 true scaffold_6: 33697952-33704072 Setaria italica
Seita.6G222800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 33703073-33704072 Setaria italica
Seita.6G222800 2.0kb upstream 2.0kb upstream 7121 true scaffold_6: 33695952-33703072 Setaria italica
Seita.6G222800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 33695952-33697951 Setaria italica
Seita.6G222800 2.0kb downstream 2.0kb downstream 7121 true scaffold_6: 33697952-33705072 Setaria italica
Seita.6G222800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 33703073-33705072 Setaria italica
Seita.6G222800 5.0kb upstream 5.0kb upstream 10121 true scaffold_6: 33692952-33703072 Setaria italica
Seita.6G222800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 33692952-33697951 Setaria italica
Seita.6G222800 5.0kb downstream 5.0kb downstream 10121 true scaffold_6: 33697952-33708072 Setaria italica
Seita.6G222800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 33703073-33708072 Setaria italica
Seita.6G222800 10.0kb upstream 10.0kb upstream 15121 true scaffold_6: 33687952-33703072 Setaria italica
Seita.6G222800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 33687952-33697951 Setaria italica
Seita.6G222800 10.0kb downstream 10.0kb downstream 15121 true scaffold_6: 33697952-33713072 Setaria italica
Seita.6G222800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 33703073-33713072 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198764 5267 Panicoideae View MSA
124574142 5269 Grass View MSA
122046856 5273 Angiosperm View MSA
121350592 5274 Embryophyte View MSA
123428292 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.906        
cufflinks 18.629     High High
cufflinks 0.787       Low
cufflinks 0.783       Low
cufflinks 1.409        
cufflinks 26.901     High High
cufflinks 7.996        
cufflinks 6.241        
cufflinks 5.346        
cufflinks 0.857       Low
cufflinks 1.508        
cufflinks 2.169        
cufflinks 10.663       High
cufflinks 1.325        
cufflinks 7.471        
cufflinks 1.366        
cufflinks 2.124        
cufflinks 0.672       Low
cufflinks 1.559        
cufflinks 4.316        

0 Strain