Gene : Seita.6G226200 S. italica v2.2
Defline:  (1 of 1) PTHR31717:SF3 - ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED Genomic Order:  2262
Name:  ? Seita.6G226200 Secondary Identifier:  ? PAC:32699258
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G226200 0.5kb upstream 0.5kb upstream 5421 true scaffold_6: 33985702-33991122 Setaria italica
Seita.6G226200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 33990623-33991122 Setaria italica
Seita.6G226200 0.5kb downstream 0.5kb downstream 5421 true scaffold_6: 33985202-33990622 Setaria italica
Seita.6G226200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 33985202-33985701 Setaria italica
Seita.6G226200 1.0kb upstream 1.0kb upstream 5921 true scaffold_6: 33985702-33991622 Setaria italica
Seita.6G226200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 33990623-33991622 Setaria italica
Seita.6G226200 1.0kb downstream 1.0kb downstream 5921 true scaffold_6: 33984702-33990622 Setaria italica
Seita.6G226200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 33984702-33985701 Setaria italica
Seita.6G226200 2.0kb upstream 2.0kb upstream 6921 true scaffold_6: 33985702-33992622 Setaria italica
Seita.6G226200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 33990623-33992622 Setaria italica
Seita.6G226200 2.0kb downstream 2.0kb downstream 6921 true scaffold_6: 33983702-33990622 Setaria italica
Seita.6G226200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 33983702-33985701 Setaria italica
Seita.6G226200 5.0kb upstream 5.0kb upstream 9921 true scaffold_6: 33985702-33995622 Setaria italica
Seita.6G226200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 33990623-33995622 Setaria italica
Seita.6G226200 5.0kb downstream 5.0kb downstream 9921 true scaffold_6: 33980702-33990622 Setaria italica
Seita.6G226200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 33980702-33985701 Setaria italica
Seita.6G226200 10.0kb upstream 10.0kb upstream 14921 true scaffold_6: 33985702-34000622 Setaria italica
Seita.6G226200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 33990623-34000622 Setaria italica
Seita.6G226200 10.0kb downstream 10.0kb downstream 14921 true scaffold_6: 33975702-33990622 Setaria italica
Seita.6G226200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 33975702-33985701 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186742 5267 Panicoideae View MSA
124579908 5269 Grass View MSA
122050487 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121350351 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.011     High  
cufflinks 20.468     High High
cufflinks 7.865        
cufflinks 7.261       Low
cufflinks 7.438       Low
cufflinks 25.522     High High
cufflinks 13.188        
cufflinks 16.351     High  
cufflinks 14.909     High  
cufflinks 16.869     High  
cufflinks 17.116     High  
cufflinks 6.721       Low
cufflinks 15.292     High  
cufflinks 14.873     High  
cufflinks 8.954        
cufflinks 11.186        
cufflinks 15.049     High  
cufflinks 11.645     High  
cufflinks 4.841       Low
cufflinks 8.077        

0 Strain