Gene : Seita.6G228800 S. italica v2.2
Defline:  (1 of 3) PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN Genomic Order:  2288
Name:  ? Seita.6G228800 Secondary Identifier:  ? PAC:32701331
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G228800 0.5kb upstream 0.5kb upstream 5627 true scaffold_6: 34189452-34195078 Setaria italica
Seita.6G228800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 34189452-34189951 Setaria italica
Seita.6G228800 0.5kb downstream 0.5kb downstream 5627 true scaffold_6: 34189952-34195578 Setaria italica
Seita.6G228800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 34195079-34195578 Setaria italica
Seita.6G228800 1.0kb upstream 1.0kb upstream 6127 true scaffold_6: 34188952-34195078 Setaria italica
Seita.6G228800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 34188952-34189951 Setaria italica
Seita.6G228800 1.0kb downstream 1.0kb downstream 6127 true scaffold_6: 34189952-34196078 Setaria italica
Seita.6G228800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 34195079-34196078 Setaria italica
Seita.6G228800 2.0kb upstream 2.0kb upstream 7127 true scaffold_6: 34187952-34195078 Setaria italica
Seita.6G228800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 34187952-34189951 Setaria italica
Seita.6G228800 2.0kb downstream 2.0kb downstream 7127 true scaffold_6: 34189952-34197078 Setaria italica
Seita.6G228800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 34195079-34197078 Setaria italica
Seita.6G228800 5.0kb upstream 5.0kb upstream 10127 true scaffold_6: 34184952-34195078 Setaria italica
Seita.6G228800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 34184952-34189951 Setaria italica
Seita.6G228800 5.0kb downstream 5.0kb downstream 10127 true scaffold_6: 34189952-34200078 Setaria italica
Seita.6G228800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 34195079-34200078 Setaria italica
Seita.6G228800 10.0kb upstream 10.0kb upstream 15127 true scaffold_6: 34179952-34195078 Setaria italica
Seita.6G228800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 34179952-34189951 Setaria italica
Seita.6G228800 10.0kb downstream 10.0kb downstream 15127 true scaffold_6: 34189952-34205078 Setaria italica
Seita.6G228800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 34195079-34205078 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179492 5267 Panicoideae View MSA
124576907 5269 Grass View MSA
122049263 5273 Angiosperm View MSA
121311321 5274 Embryophyte View MSA
123348631 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.265       High
cufflinks 7.724       High
cufflinks 4.787       Low
cufflinks 5.656        
cufflinks 6.324        
cufflinks 7.167        
cufflinks 7.417        
cufflinks 6.452        
cufflinks 6.231        
cufflinks 7.281        
cufflinks 6.999        
cufflinks 6.371        
cufflinks 6.366        
cufflinks 4.485       Low
cufflinks 7.044        
cufflinks 7.237        
cufflinks 6.41        
cufflinks 7.183        
cufflinks 5.661        
cufflinks 6.519        

0 Strain