Gene : Seita.6G238500 S. italica v2.2
Defline:  (1 of 2) PTHR10585//PTHR10585:SF35 - ER LUMEN PROTEIN RETAINING RECEPTOR Genomic Order:  2385
Name:  ? Seita.6G238500 Secondary Identifier:  ? PAC:32701623
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G238500 0.5kb upstream 0.5kb upstream 4425 true scaffold_6: 34977965-34982389 Setaria italica
Seita.6G238500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 34977965-34978464 Setaria italica
Seita.6G238500 0.5kb downstream 0.5kb downstream 4425 true scaffold_6: 34978465-34982889 Setaria italica
Seita.6G238500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 34982390-34982889 Setaria italica
Seita.6G238500 1.0kb upstream 1.0kb upstream 4925 true scaffold_6: 34977465-34982389 Setaria italica
Seita.6G238500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 34977465-34978464 Setaria italica
Seita.6G238500 1.0kb downstream 1.0kb downstream 4925 true scaffold_6: 34978465-34983389 Setaria italica
Seita.6G238500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 34982390-34983389 Setaria italica
Seita.6G238500 2.0kb upstream 2.0kb upstream 5925 true scaffold_6: 34976465-34982389 Setaria italica
Seita.6G238500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 34976465-34978464 Setaria italica
Seita.6G238500 2.0kb downstream 2.0kb downstream 5925 true scaffold_6: 34978465-34984389 Setaria italica
Seita.6G238500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 34982390-34984389 Setaria italica
Seita.6G238500 5.0kb upstream 5.0kb upstream 8925 true scaffold_6: 34973465-34982389 Setaria italica
Seita.6G238500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 34973465-34978464 Setaria italica
Seita.6G238500 5.0kb downstream 5.0kb downstream 8925 true scaffold_6: 34978465-34987389 Setaria italica
Seita.6G238500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 34982390-34987389 Setaria italica
Seita.6G238500 10.0kb upstream 10.0kb upstream 13925 true scaffold_6: 34968465-34982389 Setaria italica
Seita.6G238500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 34968465-34978464 Setaria italica
Seita.6G238500 10.0kb downstream 10.0kb downstream 13925 true scaffold_6: 34978465-34992389 Setaria italica
Seita.6G238500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 34982390-34992389 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181182 5267 Panicoideae View MSA
124585975 5269 Grass View MSA
122049823 5273 Angiosperm View MSA
121349491 5274 Embryophyte View MSA
123426417 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.822        
cufflinks 16.576     High  
cufflinks 3.195       Low
cufflinks 3.42       Low
cufflinks 3.309       Low
cufflinks 15.749     High  
cufflinks 6.526        
cufflinks 12.11        
cufflinks 6.584        
cufflinks 20.123     High High
cufflinks 14.938     High  
cufflinks 15.166     High  
cufflinks 21.14     High High
cufflinks 5.954        
cufflinks 20.187     High High
cufflinks 3.979       Low
cufflinks 17.828     High  
cufflinks 7.404        
cufflinks 6.967        
cufflinks 19.847     High High

0 Strain