Gene : Seita.6G239900 S. italica v2.2
Defline:  (1 of 1) PTHR23421:SF52 - BETA-GALACTOSIDASE 11-RELATED Genomic Order:  2399
Name:  ? Seita.6G239900 Secondary Identifier:  ? PAC:32701447
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G239900 0.5kb upstream 0.5kb upstream 4852 true scaffold_6: 35047456-35052307 Setaria italica
Seita.6G239900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35047456-35047955 Setaria italica
Seita.6G239900 0.5kb downstream 0.5kb downstream 4852 true scaffold_6: 35047956-35052807 Setaria italica
Seita.6G239900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35052308-35052807 Setaria italica
Seita.6G239900 1.0kb upstream 1.0kb upstream 5352 true scaffold_6: 35046956-35052307 Setaria italica
Seita.6G239900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35046956-35047955 Setaria italica
Seita.6G239900 1.0kb downstream 1.0kb downstream 5352 true scaffold_6: 35047956-35053307 Setaria italica
Seita.6G239900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35052308-35053307 Setaria italica
Seita.6G239900 2.0kb upstream 2.0kb upstream 6352 true scaffold_6: 35045956-35052307 Setaria italica
Seita.6G239900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35045956-35047955 Setaria italica
Seita.6G239900 2.0kb downstream 2.0kb downstream 6352 true scaffold_6: 35047956-35054307 Setaria italica
Seita.6G239900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35052308-35054307 Setaria italica
Seita.6G239900 5.0kb upstream 5.0kb upstream 9352 true scaffold_6: 35042956-35052307 Setaria italica
Seita.6G239900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35042956-35047955 Setaria italica
Seita.6G239900 5.0kb downstream 5.0kb downstream 9352 true scaffold_6: 35047956-35057307 Setaria italica
Seita.6G239900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35052308-35057307 Setaria italica
Seita.6G239900 10.0kb upstream 10.0kb upstream 14352 true scaffold_6: 35037956-35052307 Setaria italica
Seita.6G239900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35037956-35047955 Setaria italica
Seita.6G239900 10.0kb downstream 10.0kb downstream 14352 true scaffold_6: 35047956-35062307 Setaria italica
Seita.6G239900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35052308-35062307 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175741 5267 Panicoideae View MSA
124578833 5269 Grass View MSA
122042357 5273 Angiosperm View MSA
121309952 5274 Embryophyte View MSA
123347574 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.063     Low  
cufflinks 0.017     Low  
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.232       High
cufflinks 0.019     Low  
cufflinks 0.003     Low Low
cufflinks 0.002     Low Low
cufflinks 0.04     Low  
cufflinks 0.098     Low High
cufflinks 0.023     Low  
cufflinks 0.036     Low  
cufflinks 0.011     Low  
cufflinks 0.042     Low  
cufflinks 0.057     Low  
cufflinks 0.023     Low  
cufflinks 0.034     Low  
cufflinks 0.016     Low  
cufflinks 0.022     Low  

0 Strain