Gene : Seita.6G240000 S. italica v2.2
Defline:  (1 of 1) PTHR20863//PTHR20863:SF33 - ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED Genomic Order:  2400
Name:  ? Seita.6G240000 Secondary Identifier:  ? PAC:32699221
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G240000 0.5kb upstream 0.5kb upstream 2927 true scaffold_6: 35053720-35056646 Setaria italica
Seita.6G240000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35056147-35056646 Setaria italica
Seita.6G240000 0.5kb downstream 0.5kb downstream 2927 true scaffold_6: 35053220-35056146 Setaria italica
Seita.6G240000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35053220-35053719 Setaria italica
Seita.6G240000 1.0kb upstream 1.0kb upstream 3427 true scaffold_6: 35053720-35057146 Setaria italica
Seita.6G240000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35056147-35057146 Setaria italica
Seita.6G240000 1.0kb downstream 1.0kb downstream 3427 true scaffold_6: 35052720-35056146 Setaria italica
Seita.6G240000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35052720-35053719 Setaria italica
Seita.6G240000 2.0kb upstream 2.0kb upstream 4427 true scaffold_6: 35053720-35058146 Setaria italica
Seita.6G240000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35056147-35058146 Setaria italica
Seita.6G240000 2.0kb downstream 2.0kb downstream 4427 true scaffold_6: 35051720-35056146 Setaria italica
Seita.6G240000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35051720-35053719 Setaria italica
Seita.6G240000 5.0kb upstream 5.0kb upstream 7427 true scaffold_6: 35053720-35061146 Setaria italica
Seita.6G240000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35056147-35061146 Setaria italica
Seita.6G240000 5.0kb downstream 5.0kb downstream 7427 true scaffold_6: 35048720-35056146 Setaria italica
Seita.6G240000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35048720-35053719 Setaria italica
Seita.6G240000 10.0kb upstream 10.0kb upstream 12427 true scaffold_6: 35053720-35066146 Setaria italica
Seita.6G240000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35056147-35066146 Setaria italica
Seita.6G240000 10.0kb downstream 10.0kb downstream 12427 true scaffold_6: 35043720-35056146 Setaria italica
Seita.6G240000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35043720-35053719 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185062 5267 Panicoideae View MSA
124586574 5269 Grass View MSA
122049325 5273 Angiosperm View MSA
121348515 5274 Embryophyte View MSA
123428029 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.206     High  
cufflinks 99.478     High High
cufflinks 2.644       Low
cufflinks 1.669       Low
cufflinks 2.758       Low
cufflinks 79.277     High  
cufflinks 41.622     High  
cufflinks 83.392     High  
cufflinks 35.18     High  
cufflinks 119.488     High High
cufflinks 69.15     High  
cufflinks 43.26     High  
cufflinks 39.459     High  
cufflinks 6.344        
cufflinks 72.743     High  
cufflinks 8.954        
cufflinks 66.437     High  
cufflinks 10.665        
cufflinks 4.151       Low
cufflinks 75.013     High  

0 Strain