Gene : Seita.6G244400 S. italica v2.2
Defline:  (1 of 1) PTHR11071:SF213 - PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 Genomic Order:  2444
Name:  ? Seita.6G244400 Secondary Identifier:  ? PAC:32699626
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G244400 0.5kb upstream 0.5kb upstream 6308 true scaffold_6: 35270006-35276313 Setaria italica
Seita.6G244400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35275814-35276313 Setaria italica
Seita.6G244400 0.5kb downstream 0.5kb downstream 6308 true scaffold_6: 35269506-35275813 Setaria italica
Seita.6G244400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35269506-35270005 Setaria italica
Seita.6G244400 1.0kb upstream 1.0kb upstream 6808 true scaffold_6: 35270006-35276813 Setaria italica
Seita.6G244400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35275814-35276813 Setaria italica
Seita.6G244400 1.0kb downstream 1.0kb downstream 6808 true scaffold_6: 35269006-35275813 Setaria italica
Seita.6G244400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35269006-35270005 Setaria italica
Seita.6G244400 2.0kb upstream 2.0kb upstream 7808 true scaffold_6: 35270006-35277813 Setaria italica
Seita.6G244400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35275814-35277813 Setaria italica
Seita.6G244400 2.0kb downstream 2.0kb downstream 7808 true scaffold_6: 35268006-35275813 Setaria italica
Seita.6G244400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35268006-35270005 Setaria italica
Seita.6G244400 5.0kb upstream 5.0kb upstream 10808 true scaffold_6: 35270006-35280813 Setaria italica
Seita.6G244400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35275814-35280813 Setaria italica
Seita.6G244400 5.0kb downstream 5.0kb downstream 10808 true scaffold_6: 35265006-35275813 Setaria italica
Seita.6G244400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35265006-35270005 Setaria italica
Seita.6G244400 10.0kb upstream 10.0kb upstream 15808 true scaffold_6: 35270006-35285813 Setaria italica
Seita.6G244400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35275814-35285813 Setaria italica
Seita.6G244400 10.0kb downstream 10.0kb downstream 15808 true scaffold_6: 35260006-35275813 Setaria italica
Seita.6G244400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35260006-35270005 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041059 5273 Angiosperm View MSA
122181626 5267 Panicoideae View MSA
124579764 5269 Grass View MSA
121344442 5274 Embryophyte View MSA
123425036 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.095       High
cufflinks 10.367       High
cufflinks 5.083        
cufflinks 4.42       Low
cufflinks 3.845       Low
cufflinks 10.007       High
cufflinks 6.064        
cufflinks 5.395        
cufflinks 5.409        
cufflinks 6.55        
cufflinks 9.718        
cufflinks 7.751        
cufflinks 5.453        
cufflinks 4.781        
cufflinks 8.266        
cufflinks 7.987        
cufflinks 9.223        
cufflinks 10.67       High
cufflinks 3.193       Low
cufflinks 8.474        

0 Strain