Gene : Seita.6G246000 S. italica v2.2
Defline:  (1 of 1) 3.1.3.64 - Phosphatidylinositol-3-phosphatase / Phosphatidyl-3-phosphate 3-phosphohydrolase Genomic Order:  2460
Name:  ? Seita.6G246000 Secondary Identifier:  ? PAC:32699743
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6367 Setaria italica pathologic  
Sitalica PWY-6368 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G246000 0.5kb upstream 0.5kb upstream 11143 true scaffold_6: 35380834-35391976 Setaria italica
Seita.6G246000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35380834-35381333 Setaria italica
Seita.6G246000 0.5kb downstream 0.5kb downstream 11143 true scaffold_6: 35381334-35392476 Setaria italica
Seita.6G246000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35391977-35392476 Setaria italica
Seita.6G246000 1.0kb upstream 1.0kb upstream 11643 true scaffold_6: 35380334-35391976 Setaria italica
Seita.6G246000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35380334-35381333 Setaria italica
Seita.6G246000 1.0kb downstream 1.0kb downstream 11643 true scaffold_6: 35381334-35392976 Setaria italica
Seita.6G246000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35391977-35392976 Setaria italica
Seita.6G246000 2.0kb upstream 2.0kb upstream 12643 true scaffold_6: 35379334-35391976 Setaria italica
Seita.6G246000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35379334-35381333 Setaria italica
Seita.6G246000 2.0kb downstream 2.0kb downstream 12643 true scaffold_6: 35381334-35393976 Setaria italica
Seita.6G246000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35391977-35393976 Setaria italica
Seita.6G246000 5.0kb upstream 5.0kb upstream 15643 true scaffold_6: 35376334-35391976 Setaria italica
Seita.6G246000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35376334-35381333 Setaria italica
Seita.6G246000 5.0kb downstream 5.0kb downstream 15643 true scaffold_6: 35381334-35396976 Setaria italica
Seita.6G246000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35391977-35396976 Setaria italica
Seita.6G246000 10.0kb upstream 10.0kb upstream 20643 true scaffold_6: 35371334-35391976 Setaria italica
Seita.6G246000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35371334-35381333 Setaria italica
Seita.6G246000 10.0kb downstream 10.0kb downstream 20643 true scaffold_6: 35381334-35401976 Setaria italica
Seita.6G246000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35391977-35401976 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188566 5267 Panicoideae View MSA
124570389 5269 Grass View MSA
122047455 5273 Angiosperm View MSA
121350859 5274 Embryophyte View MSA
123381910 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.677        
cufflinks 4.466        
cufflinks 5.922        
cufflinks 6.544       High
cufflinks 4.622        
cufflinks 4.26        
cufflinks 4.804        
cufflinks 3.578       Low
cufflinks 3.869        
cufflinks 3.185       Low
cufflinks 4.875        
cufflinks 5.807        
cufflinks 5.095        
cufflinks 3.915        
cufflinks 4.514        
cufflinks 7.019       High
cufflinks 4.134        
cufflinks 8.426       High
cufflinks 5.196        
cufflinks 3.774       Low

0 Strain