Gene : Seita.6G246200 S. italica v2.2
Defline:  (1 of 1) PF09262 - Peroxisome biogenesis factor 1, N-terminal (PEX-1N) Genomic Order:  2462
Name:  ? Seita.6G246200 Secondary Identifier:  ? PAC:32699760
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G246200 0.5kb upstream 0.5kb upstream 7539 true scaffold_6: 35395022-35402560 Setaria italica
Seita.6G246200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35402061-35402560 Setaria italica
Seita.6G246200 0.5kb downstream 0.5kb downstream 7539 true scaffold_6: 35394522-35402060 Setaria italica
Seita.6G246200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35394522-35395021 Setaria italica
Seita.6G246200 1.0kb upstream 1.0kb upstream 8039 true scaffold_6: 35395022-35403060 Setaria italica
Seita.6G246200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35402061-35403060 Setaria italica
Seita.6G246200 1.0kb downstream 1.0kb downstream 8039 true scaffold_6: 35394022-35402060 Setaria italica
Seita.6G246200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35394022-35395021 Setaria italica
Seita.6G246200 2.0kb upstream 2.0kb upstream 9039 true scaffold_6: 35395022-35404060 Setaria italica
Seita.6G246200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35402061-35404060 Setaria italica
Seita.6G246200 2.0kb downstream 2.0kb downstream 9039 true scaffold_6: 35393022-35402060 Setaria italica
Seita.6G246200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35393022-35395021 Setaria italica
Seita.6G246200 5.0kb upstream 5.0kb upstream 12039 true scaffold_6: 35395022-35407060 Setaria italica
Seita.6G246200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35402061-35407060 Setaria italica
Seita.6G246200 5.0kb downstream 5.0kb downstream 12039 true scaffold_6: 35390022-35402060 Setaria italica
Seita.6G246200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35390022-35395021 Setaria italica
Seita.6G246200 10.0kb upstream 10.0kb upstream 17039 true scaffold_6: 35395022-35412060 Setaria italica
Seita.6G246200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35402061-35412060 Setaria italica
Seita.6G246200 10.0kb downstream 10.0kb downstream 17039 true scaffold_6: 35385022-35402060 Setaria italica
Seita.6G246200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35385022-35395021 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177437 5267 Panicoideae View MSA
124580328 5269 Grass View MSA
122044173 5273 Angiosperm View MSA
121346110 5274 Embryophyte View MSA
123424996 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.49     High High
cufflinks 9.703        
cufflinks 13.537     High  
cufflinks 13.775     High  
cufflinks 12.319     High  
cufflinks 8.944        
cufflinks 11.5        
cufflinks 7.352       Low
cufflinks 9.902        
cufflinks 8.572        
cufflinks 12.437        
cufflinks 9.13        
cufflinks 11.67        
cufflinks 8.606        
cufflinks 10.473        
cufflinks 16.57     High High
cufflinks 8.601        
cufflinks 16.609     High High
cufflinks 9.014        
cufflinks 8.777        

0 Strain