Gene : Seita.6G250100 S. italica v2.2
Defline:  (1 of 1) PTHR21000 - DIHYDROXY-ACID DEHYDRATASE DAD Genomic Order:  2501
Name:  ? Seita.6G250100 Secondary Identifier:  ? PAC:32701622
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica BRANCHED-CHAIN-AA-SYN-PWY Setaria italica pathologic  
Sitalica ILEUSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica VALSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G250100 0.5kb upstream 0.5kb upstream 5285 true scaffold_6: 35650935-35656219 Setaria italica
Seita.6G250100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35650935-35651434 Setaria italica
Seita.6G250100 0.5kb downstream 0.5kb downstream 5285 true scaffold_6: 35651435-35656719 Setaria italica
Seita.6G250100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35656220-35656719 Setaria italica
Seita.6G250100 1.0kb upstream 1.0kb upstream 5785 true scaffold_6: 35650435-35656219 Setaria italica
Seita.6G250100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35650435-35651434 Setaria italica
Seita.6G250100 1.0kb downstream 1.0kb downstream 5785 true scaffold_6: 35651435-35657219 Setaria italica
Seita.6G250100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35656220-35657219 Setaria italica
Seita.6G250100 2.0kb upstream 2.0kb upstream 6785 true scaffold_6: 35649435-35656219 Setaria italica
Seita.6G250100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35649435-35651434 Setaria italica
Seita.6G250100 2.0kb downstream 2.0kb downstream 6785 true scaffold_6: 35651435-35658219 Setaria italica
Seita.6G250100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35656220-35658219 Setaria italica
Seita.6G250100 5.0kb upstream 5.0kb upstream 9785 true scaffold_6: 35646435-35656219 Setaria italica
Seita.6G250100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35646435-35651434 Setaria italica
Seita.6G250100 5.0kb downstream 5.0kb downstream 9785 true scaffold_6: 35651435-35661219 Setaria italica
Seita.6G250100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35656220-35661219 Setaria italica
Seita.6G250100 10.0kb upstream 10.0kb upstream 14785 true scaffold_6: 35641435-35656219 Setaria italica
Seita.6G250100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35641435-35651434 Setaria italica
Seita.6G250100 10.0kb downstream 10.0kb downstream 14785 true scaffold_6: 35651435-35666219 Setaria italica
Seita.6G250100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35656220-35666219 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181183 5267 Panicoideae View MSA
124569802 5269 Grass View MSA
122041651 5273 Angiosperm View MSA
121345047 5274 Embryophyte View MSA
123424997 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.178     High  
cufflinks 16.7     High  
cufflinks 1.823       Low
cufflinks 0.705       Low
cufflinks 1.979       Low
cufflinks 15.696     High  
cufflinks 11.408        
cufflinks 18.75     High  
cufflinks 25.901     High  
cufflinks 18.652     High  
cufflinks 14.999     High  
cufflinks 19.021     High  
cufflinks 9.873        
cufflinks 4.617        
cufflinks 17.426     High  
cufflinks 3.712        
cufflinks 24.566     High  
cufflinks 4.657        
cufflinks 0.749       Low
cufflinks 25.022     High  

0 Strain