Gene : Seita.6G250900 S. italica v2.2
Defline:  (1 of 1) PF09350 - Domain of unknown function (DUF1992) (DUF1992) Genomic Order:  2509
Name:  ? Seita.6G250900 Secondary Identifier:  ? PAC:32699259
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G250900 0.5kb upstream 0.5kb upstream 2744 true scaffold_6: 35700072-35702815 Setaria italica
Seita.6G250900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 35702316-35702815 Setaria italica
Seita.6G250900 0.5kb downstream 0.5kb downstream 2744 true scaffold_6: 35699572-35702315 Setaria italica
Seita.6G250900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 35699572-35700071 Setaria italica
Seita.6G250900 1.0kb upstream 1.0kb upstream 3244 true scaffold_6: 35700072-35703315 Setaria italica
Seita.6G250900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 35702316-35703315 Setaria italica
Seita.6G250900 1.0kb downstream 1.0kb downstream 3244 true scaffold_6: 35699072-35702315 Setaria italica
Seita.6G250900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 35699072-35700071 Setaria italica
Seita.6G250900 2.0kb upstream 2.0kb upstream 4244 true scaffold_6: 35700072-35704315 Setaria italica
Seita.6G250900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 35702316-35704315 Setaria italica
Seita.6G250900 2.0kb downstream 2.0kb downstream 4244 true scaffold_6: 35698072-35702315 Setaria italica
Seita.6G250900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 35698072-35700071 Setaria italica
Seita.6G250900 5.0kb upstream 5.0kb upstream 7244 true scaffold_6: 35700072-35707315 Setaria italica
Seita.6G250900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 35702316-35707315 Setaria italica
Seita.6G250900 5.0kb downstream 5.0kb downstream 7244 true scaffold_6: 35695072-35702315 Setaria italica
Seita.6G250900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 35695072-35700071 Setaria italica
Seita.6G250900 10.0kb upstream 10.0kb upstream 12244 true scaffold_6: 35700072-35712315 Setaria italica
Seita.6G250900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 35702316-35712315 Setaria italica
Seita.6G250900 10.0kb downstream 10.0kb downstream 12244 true scaffold_6: 35690072-35702315 Setaria italica
Seita.6G250900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 35690072-35700071 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186743 5267 Panicoideae View MSA
124578963 5269 Grass View MSA
122048293 5273 Angiosperm View MSA
121348315 5274 Embryophyte View MSA
123380815 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.899       Low
cufflinks 2.849        
cufflinks 8.837       High
cufflinks 8.034       High
cufflinks 5.25        
cufflinks 3.208        
cufflinks 2.292        
cufflinks 6.305        
cufflinks 2.339        
cufflinks 3.62        
cufflinks 1.345       Low
cufflinks 3.518        
cufflinks 3.755        
cufflinks 8.779       High
cufflinks 1.793       Low
cufflinks 3.499        
cufflinks 3.256        
cufflinks 3.475        
cufflinks 11.154       High
cufflinks 2.231        

0 Strain