Gene : Seita.7G075300 S. italica v2.2
Defline:  (1 of 2) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring) / Oxoglutarate dehydrogenase (lipoamide) Genomic Order:  753
Name:  ? Seita.7G075300 Secondary Identifier:  ? PAC:32703016
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5084 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G075300 0.5kb upstream 0.5kb upstream 8094 true scaffold_7: 17883480-17891573 Setaria italica
Seita.7G075300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 17883480-17883979 Setaria italica
Seita.7G075300 0.5kb downstream 0.5kb downstream 8094 true scaffold_7: 17883980-17892073 Setaria italica
Seita.7G075300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 17891574-17892073 Setaria italica
Seita.7G075300 1.0kb upstream 1.0kb upstream 8594 true scaffold_7: 17882980-17891573 Setaria italica
Seita.7G075300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 17882980-17883979 Setaria italica
Seita.7G075300 1.0kb downstream 1.0kb downstream 8594 true scaffold_7: 17883980-17892573 Setaria italica
Seita.7G075300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 17891574-17892573 Setaria italica
Seita.7G075300 2.0kb upstream 2.0kb upstream 9594 true scaffold_7: 17881980-17891573 Setaria italica
Seita.7G075300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 17881980-17883979 Setaria italica
Seita.7G075300 2.0kb downstream 2.0kb downstream 9594 true scaffold_7: 17883980-17893573 Setaria italica
Seita.7G075300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 17891574-17893573 Setaria italica
Seita.7G075300 5.0kb upstream 5.0kb upstream 12594 true scaffold_7: 17878980-17891573 Setaria italica
Seita.7G075300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 17878980-17883979 Setaria italica
Seita.7G075300 5.0kb downstream 5.0kb downstream 12594 true scaffold_7: 17883980-17896573 Setaria italica
Seita.7G075300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 17891574-17896573 Setaria italica
Seita.7G075300 10.0kb upstream 10.0kb upstream 17594 true scaffold_7: 17873980-17891573 Setaria italica
Seita.7G075300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 17873980-17883979 Setaria italica
Seita.7G075300 10.0kb downstream 10.0kb downstream 17594 true scaffold_7: 17883980-17901573 Setaria italica
Seita.7G075300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 17891574-17901573 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179314 5267 Panicoideae View MSA
124575001 5269 Grass View MSA
122044869 5273 Angiosperm View MSA
121344749 5274 Embryophyte View MSA
123424102 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.823     High High
cufflinks 24.869     High  
cufflinks 31.872     High  
cufflinks 31.189     High  
cufflinks 30.211     High  
cufflinks 25.752     High  
cufflinks 27.52     High  
cufflinks 17.726     High  
cufflinks 25.844     High  
cufflinks 15.78     High Low
cufflinks 25.125     High  
cufflinks 14.826     High Low
cufflinks 22.716     High  
cufflinks 21.228     High  
cufflinks 15.657     High Low
cufflinks 31.929     High  
cufflinks 16.118     High Low
cufflinks 50.822     High High
cufflinks 25.945     High  
cufflinks 16.779     High Low

0 Strain