Gene : Seita.7G077500 S. italica v2.2
Defline:  (1 of 3) 2.3.1.61 - Dihydrolipoyllysine-residue succinyltransferase / Succinyl-CoA:dihydrolipoate S-succinyltransferase Genomic Order:  775
Name:  ? Seita.7G077500 Secondary Identifier:  ? PAC:32703923
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5084 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G077500 0.5kb upstream 0.5kb upstream 5790 true scaffold_7: 18150288-18156077 Setaria italica
Seita.7G077500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 18150288-18150787 Setaria italica
Seita.7G077500 0.5kb downstream 0.5kb downstream 5790 true scaffold_7: 18150788-18156577 Setaria italica
Seita.7G077500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 18156078-18156577 Setaria italica
Seita.7G077500 1.0kb upstream 1.0kb upstream 6290 true scaffold_7: 18149788-18156077 Setaria italica
Seita.7G077500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 18149788-18150787 Setaria italica
Seita.7G077500 1.0kb downstream 1.0kb downstream 6290 true scaffold_7: 18150788-18157077 Setaria italica
Seita.7G077500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 18156078-18157077 Setaria italica
Seita.7G077500 2.0kb upstream 2.0kb upstream 7290 true scaffold_7: 18148788-18156077 Setaria italica
Seita.7G077500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 18148788-18150787 Setaria italica
Seita.7G077500 2.0kb downstream 2.0kb downstream 7290 true scaffold_7: 18150788-18158077 Setaria italica
Seita.7G077500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 18156078-18158077 Setaria italica
Seita.7G077500 5.0kb upstream 5.0kb upstream 10290 true scaffold_7: 18145788-18156077 Setaria italica
Seita.7G077500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 18145788-18150787 Setaria italica
Seita.7G077500 5.0kb downstream 5.0kb downstream 10290 true scaffold_7: 18150788-18161077 Setaria italica
Seita.7G077500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 18156078-18161077 Setaria italica
Seita.7G077500 10.0kb upstream 10.0kb upstream 15290 true scaffold_7: 18140788-18156077 Setaria italica
Seita.7G077500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 18140788-18150787 Setaria italica
Seita.7G077500 10.0kb downstream 10.0kb downstream 15290 true scaffold_7: 18150788-18166077 Setaria italica
Seita.7G077500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 18156078-18166077 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175431 5267 Panicoideae View MSA
124587675 5269 Grass View MSA
122045600 5273 Angiosperm View MSA
121347048 5274 Embryophyte View MSA
123423906 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.242     High  
cufflinks 29.162     High  
cufflinks 18.498     High Low
cufflinks 17.347     High Low
cufflinks 19.045     High Low
cufflinks 30.715     High  
cufflinks 19.997     High  
cufflinks 31.591     High  
cufflinks 28.24     High  
cufflinks 40.633     High High
cufflinks 38.661     High  
cufflinks 39.667     High  
cufflinks 36.945     High  
cufflinks 22.282     High  
cufflinks 44.789     High High
cufflinks 15.99     High Low
cufflinks 46.818     High High
cufflinks 22.808     High  
cufflinks 20.11     High  
cufflinks 44.542     High High

0 Strain