Gene : Seita.7G084500 S. italica v2.2

Defline:  (1 of 1) PTHR12415//PTHR12415:SF2 - TYROSYL-DNA PHOSPHODIESTERASE 1 Genomic Order:  845
Name:  ? Seita.7G084500 Secondary Identifier:  ? PAC:32703731

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G084500 0.5kb upstream 0.5kb upstream 10866 true scaffold_7: 19012454-19023319 Setaria italica
Seita.7G084500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 19012454-19012953 Setaria italica
Seita.7G084500 0.5kb downstream 0.5kb downstream 10866 true scaffold_7: 19012954-19023819 Setaria italica
Seita.7G084500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 19023320-19023819 Setaria italica
Seita.7G084500 1.0kb upstream 1.0kb upstream 11366 true scaffold_7: 19011954-19023319 Setaria italica
Seita.7G084500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 19011954-19012953 Setaria italica
Seita.7G084500 1.0kb downstream 1.0kb downstream 11366 true scaffold_7: 19012954-19024319 Setaria italica
Seita.7G084500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 19023320-19024319 Setaria italica
Seita.7G084500 2.0kb upstream 2.0kb upstream 12366 true scaffold_7: 19010954-19023319 Setaria italica
Seita.7G084500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 19010954-19012953 Setaria italica
Seita.7G084500 2.0kb downstream 2.0kb downstream 12366 true scaffold_7: 19012954-19025319 Setaria italica
Seita.7G084500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 19023320-19025319 Setaria italica
Seita.7G084500 5.0kb upstream 5.0kb upstream 15366 true scaffold_7: 19007954-19023319 Setaria italica
Seita.7G084500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 19007954-19012953 Setaria italica
Seita.7G084500 5.0kb downstream 5.0kb downstream 15366 true scaffold_7: 19012954-19028319 Setaria italica
Seita.7G084500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 19023320-19028319 Setaria italica
Seita.7G084500 10.0kb upstream 10.0kb upstream 20366 true scaffold_7: 19002954-19023319 Setaria italica
Seita.7G084500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 19002954-19012953 Setaria italica
Seita.7G084500 10.0kb downstream 10.0kb downstream 20366 true scaffold_7: 19012954-19033319 Setaria italica
Seita.7G084500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 19023320-19033319 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182356 5267 Panicoideae View MSA
124586619 5269 Grass View MSA
122047729 5273 Angiosperm View MSA
121349694 5274 Embryophyte View MSA
123381403 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.373        
cufflinks 2.802       High
cufflinks 2.154        
cufflinks 2.381        
cufflinks 2.381        
cufflinks 2.883       High
cufflinks 2.483        
cufflinks 2.557        
cufflinks 2.799       High
cufflinks 2.27        
cufflinks 3.188       High
cufflinks 2.093        
cufflinks 2.124        
cufflinks 1.927        
cufflinks 2.446        
cufflinks 1.618       Low
cufflinks 2.076        
cufflinks 1.474       Low
cufflinks 1.578       Low
cufflinks 2.52        

0 Strain