Gene : Seita.7G087000 S. italica v2.2
Defline:  (1 of 2) PF07082 - Protein of unknown function (DUF1350) (DUF1350) Genomic Order:  870
Name:  ? Seita.7G087000 Secondary Identifier:  ? PAC:32701994
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G087000 0.5kb upstream 0.5kb upstream 6354 true scaffold_7: 19190519-19196872 Setaria italica
Seita.7G087000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 19196373-19196872 Setaria italica
Seita.7G087000 0.5kb downstream 0.5kb downstream 6354 true scaffold_7: 19190019-19196372 Setaria italica
Seita.7G087000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 19190019-19190518 Setaria italica
Seita.7G087000 1.0kb upstream 1.0kb upstream 6854 true scaffold_7: 19190519-19197372 Setaria italica
Seita.7G087000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 19196373-19197372 Setaria italica
Seita.7G087000 1.0kb downstream 1.0kb downstream 6854 true scaffold_7: 19189519-19196372 Setaria italica
Seita.7G087000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 19189519-19190518 Setaria italica
Seita.7G087000 2.0kb upstream 2.0kb upstream 7854 true scaffold_7: 19190519-19198372 Setaria italica
Seita.7G087000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 19196373-19198372 Setaria italica
Seita.7G087000 2.0kb downstream 2.0kb downstream 7854 true scaffold_7: 19188519-19196372 Setaria italica
Seita.7G087000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 19188519-19190518 Setaria italica
Seita.7G087000 5.0kb upstream 5.0kb upstream 10854 true scaffold_7: 19190519-19201372 Setaria italica
Seita.7G087000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 19196373-19201372 Setaria italica
Seita.7G087000 5.0kb downstream 5.0kb downstream 10854 true scaffold_7: 19185519-19196372 Setaria italica
Seita.7G087000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 19185519-19190518 Setaria italica
Seita.7G087000 10.0kb upstream 10.0kb upstream 15854 true scaffold_7: 19190519-19206372 Setaria italica
Seita.7G087000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 19196373-19206372 Setaria italica
Seita.7G087000 10.0kb downstream 10.0kb downstream 15854 true scaffold_7: 19180519-19196372 Setaria italica
Seita.7G087000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 19180519-19190518 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187974 5267 Panicoideae View MSA
124569339 5269 Grass View MSA
122044071 5273 Angiosperm View MSA
121345881 5274 Embryophyte View MSA
123427638 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.766        
cufflinks 0.764       Low
cufflinks 4.843       High
cufflinks 4.395       High
cufflinks 2.805        
cufflinks 0.855       Low
cufflinks 2.101        
cufflinks 2.754        
cufflinks 1.699        
cufflinks 0.887       Low
cufflinks 1.147        
cufflinks 1.813        
cufflinks 2.235        
cufflinks 4.112       High
cufflinks 1.34        
cufflinks 2.635        
cufflinks 1.454        
cufflinks 3.115        
cufflinks 3.78       High
cufflinks 1.257        

0 Strain