Gene : Seita.7G092500 S. italica v2.2
Defline:  (1 of 227) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  925
Name:  ? Seita.7G092500 Secondary Identifier:  ? PAC:32702526
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G092500 0.5kb upstream 0.5kb upstream 3239 true scaffold_7: 19581951-19585189 Setaria italica
Seita.7G092500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 19581951-19582450 Setaria italica
Seita.7G092500 0.5kb downstream 0.5kb downstream 3239 true scaffold_7: 19582451-19585689 Setaria italica
Seita.7G092500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 19585190-19585689 Setaria italica
Seita.7G092500 1.0kb upstream 1.0kb upstream 3739 true scaffold_7: 19581451-19585189 Setaria italica
Seita.7G092500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 19581451-19582450 Setaria italica
Seita.7G092500 1.0kb downstream 1.0kb downstream 3739 true scaffold_7: 19582451-19586189 Setaria italica
Seita.7G092500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 19585190-19586189 Setaria italica
Seita.7G092500 2.0kb upstream 2.0kb upstream 4739 true scaffold_7: 19580451-19585189 Setaria italica
Seita.7G092500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 19580451-19582450 Setaria italica
Seita.7G092500 2.0kb downstream 2.0kb downstream 4739 true scaffold_7: 19582451-19587189 Setaria italica
Seita.7G092500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 19585190-19587189 Setaria italica
Seita.7G092500 5.0kb upstream 5.0kb upstream 7739 true scaffold_7: 19577451-19585189 Setaria italica
Seita.7G092500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 19577451-19582450 Setaria italica
Seita.7G092500 5.0kb downstream 5.0kb downstream 7739 true scaffold_7: 19582451-19590189 Setaria italica
Seita.7G092500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 19585190-19590189 Setaria italica
Seita.7G092500 10.0kb upstream 10.0kb upstream 12739 true scaffold_7: 19572451-19585189 Setaria italica
Seita.7G092500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 19572451-19582450 Setaria italica
Seita.7G092500 10.0kb downstream 10.0kb downstream 12739 true scaffold_7: 19582451-19595189 Setaria italica
Seita.7G092500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 19585190-19595189 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176580 5267 Panicoideae View MSA
124570108 5269 Grass View MSA
122047965 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310823 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.264        
cufflinks 1.401        
cufflinks 1.157        
cufflinks 1.339        
cufflinks 1.286        
cufflinks 1.146        
cufflinks 1.289        
cufflinks 2.008        
cufflinks 1.547        
cufflinks 3.718       High
cufflinks 1.176        
cufflinks 2.283        
cufflinks 2.11        
cufflinks 2.043        
cufflinks 2.126        
cufflinks 1.435        
cufflinks 3.539       High
cufflinks 1.534        
cufflinks 0.781       Low
cufflinks 2.208        

0 Strain