Gene : Seita.7G098700 S. italica v2.2
Defline:  (1 of 2) 6.3.4.21 - Nicotinate phosphoribosyltransferase / Nicotinic acid phosphoribosyltransferase Genomic Order:  987
Name:  ? Seita.7G098700 Secondary Identifier:  ? PAC:32704458
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5381 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G098700 0.5kb upstream 0.5kb upstream 8520 true scaffold_7: 20173124-20181643 Setaria italica
Seita.7G098700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 20173124-20173623 Setaria italica
Seita.7G098700 0.5kb downstream 0.5kb downstream 8520 true scaffold_7: 20173624-20182143 Setaria italica
Seita.7G098700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 20181644-20182143 Setaria italica
Seita.7G098700 1.0kb upstream 1.0kb upstream 9020 true scaffold_7: 20172624-20181643 Setaria italica
Seita.7G098700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 20172624-20173623 Setaria italica
Seita.7G098700 1.0kb downstream 1.0kb downstream 9020 true scaffold_7: 20173624-20182643 Setaria italica
Seita.7G098700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 20181644-20182643 Setaria italica
Seita.7G098700 2.0kb upstream 2.0kb upstream 10020 true scaffold_7: 20171624-20181643 Setaria italica
Seita.7G098700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 20171624-20173623 Setaria italica
Seita.7G098700 2.0kb downstream 2.0kb downstream 10020 true scaffold_7: 20173624-20183643 Setaria italica
Seita.7G098700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 20181644-20183643 Setaria italica
Seita.7G098700 5.0kb upstream 5.0kb upstream 13020 true scaffold_7: 20168624-20181643 Setaria italica
Seita.7G098700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 20168624-20173623 Setaria italica
Seita.7G098700 5.0kb downstream 5.0kb downstream 13020 true scaffold_7: 20173624-20186643 Setaria italica
Seita.7G098700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 20181644-20186643 Setaria italica
Seita.7G098700 10.0kb upstream 10.0kb upstream 18020 true scaffold_7: 20163624-20181643 Setaria italica
Seita.7G098700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 20163624-20173623 Setaria italica
Seita.7G098700 10.0kb downstream 10.0kb downstream 18020 true scaffold_7: 20173624-20191643 Setaria italica
Seita.7G098700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 20181644-20191643 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186329 5267 Panicoideae View MSA
124568633 5269 Grass View MSA
122047355 5273 Angiosperm View MSA
121346796 5274 Embryophyte View MSA
123425475 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.813        
cufflinks 1.949        
cufflinks 0.527       Low
cufflinks 0.535       Low
cufflinks 0.567       Low
cufflinks 2.142        
cufflinks 2.539        
cufflinks 1.681        
cufflinks 1.952        
cufflinks 2.674        
cufflinks 3.227        
cufflinks 6.636       High
cufflinks 3.032        
cufflinks 1.632        
cufflinks 4.235        
cufflinks 1.568        
cufflinks 3.687        
cufflinks 4.222        
cufflinks 1.719        
cufflinks 5.665       High

0 Strain