Gene : Seita.7G100600 S. italica v2.2
Defline:  (1 of 1) 2.1.2.2 - Phosphoribosylglycinamide formyltransferase / Glycinamide ribonucleotide transformylase Genomic Order:  1006
Name:  ? Seita.7G100600 Secondary Identifier:  ? PAC:32704600
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6121 Setaria italica pathologic  
Sitalica PWY-6613 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G100600 0.5kb upstream 0.5kb upstream 3039 true scaffold_7: 20317519-20320557 Setaria italica
Seita.7G100600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 20320058-20320557 Setaria italica
Seita.7G100600 0.5kb downstream 0.5kb downstream 3039 true scaffold_7: 20317019-20320057 Setaria italica
Seita.7G100600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 20317019-20317518 Setaria italica
Seita.7G100600 1.0kb upstream 1.0kb upstream 3539 true scaffold_7: 20317519-20321057 Setaria italica
Seita.7G100600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 20320058-20321057 Setaria italica
Seita.7G100600 1.0kb downstream 1.0kb downstream 3539 true scaffold_7: 20316519-20320057 Setaria italica
Seita.7G100600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 20316519-20317518 Setaria italica
Seita.7G100600 2.0kb upstream 2.0kb upstream 4539 true scaffold_7: 20317519-20322057 Setaria italica
Seita.7G100600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 20320058-20322057 Setaria italica
Seita.7G100600 2.0kb downstream 2.0kb downstream 4539 true scaffold_7: 20315519-20320057 Setaria italica
Seita.7G100600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 20315519-20317518 Setaria italica
Seita.7G100600 5.0kb upstream 5.0kb upstream 7539 true scaffold_7: 20317519-20325057 Setaria italica
Seita.7G100600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 20320058-20325057 Setaria italica
Seita.7G100600 5.0kb downstream 5.0kb downstream 7539 true scaffold_7: 20312519-20320057 Setaria italica
Seita.7G100600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 20312519-20317518 Setaria italica
Seita.7G100600 10.0kb upstream 10.0kb upstream 12539 true scaffold_7: 20317519-20330057 Setaria italica
Seita.7G100600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 20320058-20330057 Setaria italica
Seita.7G100600 10.0kb downstream 10.0kb downstream 12539 true scaffold_7: 20307519-20320057 Setaria italica
Seita.7G100600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 20307519-20317518 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175399 5267 Panicoideae View MSA
124585048 5269 Grass View MSA
122049914 5273 Angiosperm View MSA
121349551 5274 Embryophyte View MSA
123426469 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.226        
cufflinks 3.191        
cufflinks 2.926        
cufflinks 2.93        
cufflinks 2.987        
cufflinks 3.413        
cufflinks 2.029       Low
cufflinks 3.856        
cufflinks 3.575        
cufflinks 6.415       High
cufflinks 3.08        
cufflinks 4.846       High
cufflinks 3.625        
cufflinks 3.612        
cufflinks 3.567        
cufflinks 2.504       Low
cufflinks 5.803       High
cufflinks 2.464       Low
cufflinks 2.21       Low
cufflinks 4.77       High

0 Strain