Gene : Seita.7G100400 S. italica v2.2
Genomic Order:  1004 Name:  ? Seita.7G100400
Secondary Identifier:  ? PAC:32703012
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G100400 0.5kb upstream 0.5kb upstream 3352 true scaffold_7: 20303462-20306813 Setaria italica
Seita.7G100400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 20306314-20306813 Setaria italica
Seita.7G100400 0.5kb downstream 0.5kb downstream 3352 true scaffold_7: 20302962-20306313 Setaria italica
Seita.7G100400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 20302962-20303461 Setaria italica
Seita.7G100400 1.0kb upstream 1.0kb upstream 3852 true scaffold_7: 20303462-20307313 Setaria italica
Seita.7G100400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 20306314-20307313 Setaria italica
Seita.7G100400 1.0kb downstream 1.0kb downstream 3852 true scaffold_7: 20302462-20306313 Setaria italica
Seita.7G100400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 20302462-20303461 Setaria italica
Seita.7G100400 2.0kb upstream 2.0kb upstream 4852 true scaffold_7: 20303462-20308313 Setaria italica
Seita.7G100400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 20306314-20308313 Setaria italica
Seita.7G100400 2.0kb downstream 2.0kb downstream 4852 true scaffold_7: 20301462-20306313 Setaria italica
Seita.7G100400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 20301462-20303461 Setaria italica
Seita.7G100400 5.0kb upstream 5.0kb upstream 7852 true scaffold_7: 20303462-20311313 Setaria italica
Seita.7G100400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 20306314-20311313 Setaria italica
Seita.7G100400 5.0kb downstream 5.0kb downstream 7852 true scaffold_7: 20298462-20306313 Setaria italica
Seita.7G100400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 20298462-20303461 Setaria italica
Seita.7G100400 10.0kb upstream 10.0kb upstream 12852 true scaffold_7: 20303462-20316313 Setaria italica
Seita.7G100400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 20306314-20316313 Setaria italica
Seita.7G100400 10.0kb downstream 10.0kb downstream 12852 true scaffold_7: 20293462-20306313 Setaria italica
Seita.7G100400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 20293462-20303461 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179316 5267 Panicoideae View MSA
124569672 5269 Grass View MSA
122044217 5273 Angiosperm View MSA
121310256 5274 Embryophyte View MSA
123347795 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.652        
cufflinks 5.983        
cufflinks 1.956       Low
cufflinks 2.223       Low
cufflinks 2.861       Low
cufflinks 6.269        
cufflinks 4.511        
cufflinks 6.089        
cufflinks 4.666        
cufflinks 5.226        
cufflinks 5.756        
cufflinks 5.662        
cufflinks 4.756        
cufflinks 3.365        
cufflinks 5.957        
cufflinks 3.328        
cufflinks 6.402        
cufflinks 3.086        
cufflinks 2.201       Low
cufflinks 6.437       High

0 Strain