Gene : Seita.7G100800 S. italica v2.2
Defline:  (1 of 57) PF03514 - GRAS domain family (GRAS) Genomic Order:  1008
Name:  ? Seita.7G100800 Secondary Identifier:  ? PAC:32706018
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G100800 0.5kb upstream 0.5kb upstream 2633 true scaffold_7: 20325014-20327646 Setaria italica
Seita.7G100800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 20327147-20327646 Setaria italica
Seita.7G100800 0.5kb downstream 0.5kb downstream 2633 true scaffold_7: 20324514-20327146 Setaria italica
Seita.7G100800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 20324514-20325013 Setaria italica
Seita.7G100800 1.0kb upstream 1.0kb upstream 3133 true scaffold_7: 20325014-20328146 Setaria italica
Seita.7G100800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 20327147-20328146 Setaria italica
Seita.7G100800 1.0kb downstream 1.0kb downstream 3133 true scaffold_7: 20324014-20327146 Setaria italica
Seita.7G100800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 20324014-20325013 Setaria italica
Seita.7G100800 2.0kb upstream 2.0kb upstream 4133 true scaffold_7: 20325014-20329146 Setaria italica
Seita.7G100800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 20327147-20329146 Setaria italica
Seita.7G100800 2.0kb downstream 2.0kb downstream 4133 true scaffold_7: 20323014-20327146 Setaria italica
Seita.7G100800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 20323014-20325013 Setaria italica
Seita.7G100800 5.0kb upstream 5.0kb upstream 7133 true scaffold_7: 20325014-20332146 Setaria italica
Seita.7G100800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 20327147-20332146 Setaria italica
Seita.7G100800 5.0kb downstream 5.0kb downstream 7133 true scaffold_7: 20320014-20327146 Setaria italica
Seita.7G100800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 20320014-20325013 Setaria italica
Seita.7G100800 10.0kb upstream 10.0kb upstream 12133 true scaffold_7: 20325014-20337146 Setaria italica
Seita.7G100800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 20327147-20337146 Setaria italica
Seita.7G100800 10.0kb downstream 10.0kb downstream 12133 true scaffold_7: 20315014-20327146 Setaria italica
Seita.7G100800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 20315014-20325013 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198276 5267 Panicoideae View MSA
124579769 5269 Grass View MSA
122048642 5273 Angiosperm View MSA
121311053 5274 Embryophyte View MSA
123348407 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.451        
cufflinks 0.181       Low
cufflinks 0.963        
cufflinks 1.654        
cufflinks 0.526        
cufflinks 0.211       Low
cufflinks 0.128       Low
cufflinks 0.353        
cufflinks 0.325        
cufflinks 0.553        
cufflinks 0.798        
cufflinks 15.792     High High
cufflinks 0.99        
cufflinks 0.695        
cufflinks 0.939        
cufflinks 0.121       Low
cufflinks 0.889        
cufflinks 2.348       High
cufflinks 0.536        
cufflinks 1.701        

0 Strain