Gene : Seita.7G101800 S. italica v2.2
Defline:  (1 of 1) 2.8.4.5 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase / Methylthio-threonylcarbamoyl-adenosine transferase B Genomic Order:  1018
Name:  ? Seita.7G101800 Secondary Identifier:  ? PAC:32704357
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G101800 0.5kb upstream 0.5kb upstream 4193 true scaffold_7: 20434653-20438845 Setaria italica
Seita.7G101800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 20438346-20438845 Setaria italica
Seita.7G101800 0.5kb downstream 0.5kb downstream 4193 true scaffold_7: 20434153-20438345 Setaria italica
Seita.7G101800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 20434153-20434652 Setaria italica
Seita.7G101800 1.0kb upstream 1.0kb upstream 4693 true scaffold_7: 20434653-20439345 Setaria italica
Seita.7G101800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 20438346-20439345 Setaria italica
Seita.7G101800 1.0kb downstream 1.0kb downstream 4693 true scaffold_7: 20433653-20438345 Setaria italica
Seita.7G101800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 20433653-20434652 Setaria italica
Seita.7G101800 2.0kb upstream 2.0kb upstream 5693 true scaffold_7: 20434653-20440345 Setaria italica
Seita.7G101800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 20438346-20440345 Setaria italica
Seita.7G101800 2.0kb downstream 2.0kb downstream 5693 true scaffold_7: 20432653-20438345 Setaria italica
Seita.7G101800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 20432653-20434652 Setaria italica
Seita.7G101800 5.0kb upstream 5.0kb upstream 8693 true scaffold_7: 20434653-20443345 Setaria italica
Seita.7G101800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 20438346-20443345 Setaria italica
Seita.7G101800 5.0kb downstream 5.0kb downstream 8693 true scaffold_7: 20429653-20438345 Setaria italica
Seita.7G101800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 20429653-20434652 Setaria italica
Seita.7G101800 10.0kb upstream 10.0kb upstream 13693 true scaffold_7: 20434653-20448345 Setaria italica
Seita.7G101800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 20438346-20448345 Setaria italica
Seita.7G101800 10.0kb downstream 10.0kb downstream 13693 true scaffold_7: 20424653-20438345 Setaria italica
Seita.7G101800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 20424653-20434652 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183042 5267 Panicoideae View MSA
124576915 5269 Grass View MSA
122047649 5273 Angiosperm View MSA
121350864 5274 Embryophyte View MSA
123427541 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.922     High High
cufflinks 13.984     High  
cufflinks 9.664        
cufflinks 7.938       Low
cufflinks 10.443        
cufflinks 15.711     High High
cufflinks 11.001        
cufflinks 10.918        
cufflinks 16.26     High High
cufflinks 6.165       Low
cufflinks 12.403        
cufflinks 13.418        
cufflinks 11.243        
cufflinks 11.403        
cufflinks 11.956        
cufflinks 11.008        
cufflinks 13.888        
cufflinks 13.19     High  
cufflinks 8.122       Low
cufflinks 12.239        

0 Strain