Gene : Seita.7G105700 S. italica v2.2
Defline:  (1 of 2) PTHR10350 - NUCLEAR PORE COMPLEX PROTEIN NUP155 Genomic Order:  1057
Name:  ? Seita.7G105700 Secondary Identifier:  ? PAC:32703384
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G105700 0.5kb upstream 0.5kb upstream 9396 true scaffold_7: 20692625-20702020 Setaria italica
Seita.7G105700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 20701521-20702020 Setaria italica
Seita.7G105700 0.5kb downstream 0.5kb downstream 9396 true scaffold_7: 20692125-20701520 Setaria italica
Seita.7G105700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 20692125-20692624 Setaria italica
Seita.7G105700 1.0kb upstream 1.0kb upstream 9896 true scaffold_7: 20692625-20702520 Setaria italica
Seita.7G105700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 20701521-20702520 Setaria italica
Seita.7G105700 1.0kb downstream 1.0kb downstream 9896 true scaffold_7: 20691625-20701520 Setaria italica
Seita.7G105700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 20691625-20692624 Setaria italica
Seita.7G105700 2.0kb upstream 2.0kb upstream 10896 true scaffold_7: 20692625-20703520 Setaria italica
Seita.7G105700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 20701521-20703520 Setaria italica
Seita.7G105700 2.0kb downstream 2.0kb downstream 10896 true scaffold_7: 20690625-20701520 Setaria italica
Seita.7G105700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 20690625-20692624 Setaria italica
Seita.7G105700 5.0kb upstream 5.0kb upstream 13896 true scaffold_7: 20692625-20706520 Setaria italica
Seita.7G105700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 20701521-20706520 Setaria italica
Seita.7G105700 5.0kb downstream 5.0kb downstream 13896 true scaffold_7: 20687625-20701520 Setaria italica
Seita.7G105700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 20687625-20692624 Setaria italica
Seita.7G105700 10.0kb upstream 10.0kb upstream 18896 true scaffold_7: 20692625-20711520 Setaria italica
Seita.7G105700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 20701521-20711520 Setaria italica
Seita.7G105700 10.0kb downstream 10.0kb downstream 18896 true scaffold_7: 20682625-20701520 Setaria italica
Seita.7G105700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 20682625-20692624 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196433 5267 Panicoideae View MSA
124576278 5269 Grass View MSA
122046521 5273 Angiosperm View MSA
121344629 5274 Embryophyte View MSA
123428808 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.246     High High
cufflinks 21.241     High High
cufflinks 6.175        
cufflinks 2.963       Low
cufflinks 3.848       Low
cufflinks 16.725     High  
cufflinks 14.059     High  
cufflinks 9.232        
cufflinks 8.329        
cufflinks 11.05        
cufflinks 20.338     High High
cufflinks 10.863        
cufflinks 7.541        
cufflinks 8.826        
cufflinks 16.11     High  
cufflinks 14.952     High  
cufflinks 11.757        
cufflinks 16.355     High  
cufflinks 4.044       Low
cufflinks 13.739        

0 Strain