Gene : Seita.7G106100 S. italica v2.2
Defline:  (1 of 1) PTHR22904:SF373 - PROTEIN TIC 40, CHLOROPLASTIC Genomic Order:  1061
Name:  ? Seita.7G106100 Secondary Identifier:  ? PAC:32705710
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G106100 0.5kb upstream 0.5kb upstream 6124 true scaffold_7: 20739695-20745818 Setaria italica
Seita.7G106100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 20745319-20745818 Setaria italica
Seita.7G106100 0.5kb downstream 0.5kb downstream 6124 true scaffold_7: 20739195-20745318 Setaria italica
Seita.7G106100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 20739195-20739694 Setaria italica
Seita.7G106100 1.0kb upstream 1.0kb upstream 6624 true scaffold_7: 20739695-20746318 Setaria italica
Seita.7G106100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 20745319-20746318 Setaria italica
Seita.7G106100 1.0kb downstream 1.0kb downstream 6624 true scaffold_7: 20738695-20745318 Setaria italica
Seita.7G106100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 20738695-20739694 Setaria italica
Seita.7G106100 2.0kb upstream 2.0kb upstream 7624 true scaffold_7: 20739695-20747318 Setaria italica
Seita.7G106100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 20745319-20747318 Setaria italica
Seita.7G106100 2.0kb downstream 2.0kb downstream 7624 true scaffold_7: 20737695-20745318 Setaria italica
Seita.7G106100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 20737695-20739694 Setaria italica
Seita.7G106100 5.0kb upstream 5.0kb upstream 10624 true scaffold_7: 20739695-20750318 Setaria italica
Seita.7G106100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 20745319-20750318 Setaria italica
Seita.7G106100 5.0kb downstream 5.0kb downstream 10624 true scaffold_7: 20734695-20745318 Setaria italica
Seita.7G106100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 20734695-20739694 Setaria italica
Seita.7G106100 10.0kb upstream 10.0kb upstream 15624 true scaffold_7: 20739695-20755318 Setaria italica
Seita.7G106100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 20745319-20755318 Setaria italica
Seita.7G106100 10.0kb downstream 10.0kb downstream 15624 true scaffold_7: 20729695-20745318 Setaria italica
Seita.7G106100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 20729695-20739694 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183061 5267 Panicoideae View MSA
124588048 5269 Grass View MSA
122043574 5273 Angiosperm View MSA
121344558 5274 Embryophyte View MSA
123424576 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.758     High  
cufflinks 17.138     High  
cufflinks 17.848     High  
cufflinks 14.693     High  
cufflinks 23.6     High  
cufflinks 18.472     High  
cufflinks 30.967     High  
cufflinks 37.287     High High
cufflinks 61.869     High High
cufflinks 19.137     High  
cufflinks 19.612     High  
cufflinks 9.249       Low
cufflinks 9.604       Low
cufflinks 20.506     High  
cufflinks 9.323       Low
cufflinks 32.662     High High
cufflinks 10.615       Low
cufflinks 31.303     High  
cufflinks 12.527     High  
cufflinks 9.801       Low

0 Strain