Gene : Seita.7G040700 S. italica v2.2
Defline:  (1 of 1) PTHR35514:SF1 - THYLAKOID LUMENAL 15.0 KDA PROTEIN 2, CHLOROPLASTIC Genomic Order:  407
Name:  ? Seita.7G040700 Secondary Identifier:  ? PAC:32702598
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G040700 0.5kb upstream 0.5kb upstream 4097 true scaffold_7: 12409290-12413386 Setaria italica
Seita.7G040700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 12409290-12409789 Setaria italica
Seita.7G040700 0.5kb downstream 0.5kb downstream 4097 true scaffold_7: 12409790-12413886 Setaria italica
Seita.7G040700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 12413387-12413886 Setaria italica
Seita.7G040700 1.0kb upstream 1.0kb upstream 4597 true scaffold_7: 12408790-12413386 Setaria italica
Seita.7G040700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 12408790-12409789 Setaria italica
Seita.7G040700 1.0kb downstream 1.0kb downstream 4597 true scaffold_7: 12409790-12414386 Setaria italica
Seita.7G040700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 12413387-12414386 Setaria italica
Seita.7G040700 2.0kb upstream 2.0kb upstream 5597 true scaffold_7: 12407790-12413386 Setaria italica
Seita.7G040700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 12407790-12409789 Setaria italica
Seita.7G040700 2.0kb downstream 2.0kb downstream 5597 true scaffold_7: 12409790-12415386 Setaria italica
Seita.7G040700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 12413387-12415386 Setaria italica
Seita.7G040700 5.0kb upstream 5.0kb upstream 8597 true scaffold_7: 12404790-12413386 Setaria italica
Seita.7G040700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 12404790-12409789 Setaria italica
Seita.7G040700 5.0kb downstream 5.0kb downstream 8597 true scaffold_7: 12409790-12418386 Setaria italica
Seita.7G040700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 12413387-12418386 Setaria italica
Seita.7G040700 10.0kb upstream 10.0kb upstream 13597 true scaffold_7: 12399790-12413386 Setaria italica
Seita.7G040700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 12399790-12409789 Setaria italica
Seita.7G040700 10.0kb downstream 10.0kb downstream 13597 true scaffold_7: 12409790-12423386 Setaria italica
Seita.7G040700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 12413387-12423386 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177830 5267 Panicoideae View MSA
124581506 5269 Grass View MSA
122051168 5273 Angiosperm View MSA
121346154 5274 Embryophyte View MSA
123424497 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.205        
cufflinks 3.082        
cufflinks 5.737        
cufflinks 7.756        
cufflinks 10.763     High  
cufflinks 3.301        
cufflinks 10.046        
cufflinks 12.78       High
cufflinks 12.746     High High
cufflinks 2.056        
cufflinks 1.55        
cufflinks 0.325       Low
cufflinks 1.143        
cufflinks 6.675        
cufflinks 0.275       Low
cufflinks 9.888        
cufflinks 0.382       Low
cufflinks 3.687        
cufflinks 7.431        
cufflinks 0.38       Low

0 Strain