Gene : Seita.7G045300 S. italica v2.2
Defline:  (1 of 3) PTHR11514:SF33 - TRANSCRIPTION FACTOR BHLH27-RELATED Genomic Order:  453
Name:  ? Seita.7G045300 Secondary Identifier:  ? PAC:32702997
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G045300 0.5kb upstream 0.5kb upstream 2841 true scaffold_7: 13553843-13556683 Setaria italica
Seita.7G045300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 13556184-13556683 Setaria italica
Seita.7G045300 0.5kb downstream 0.5kb downstream 2841 true scaffold_7: 13553343-13556183 Setaria italica
Seita.7G045300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 13553343-13553842 Setaria italica
Seita.7G045300 1.0kb upstream 1.0kb upstream 3341 true scaffold_7: 13553843-13557183 Setaria italica
Seita.7G045300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 13556184-13557183 Setaria italica
Seita.7G045300 1.0kb downstream 1.0kb downstream 3341 true scaffold_7: 13552843-13556183 Setaria italica
Seita.7G045300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 13552843-13553842 Setaria italica
Seita.7G045300 2.0kb upstream 2.0kb upstream 4341 true scaffold_7: 13553843-13558183 Setaria italica
Seita.7G045300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 13556184-13558183 Setaria italica
Seita.7G045300 2.0kb downstream 2.0kb downstream 4341 true scaffold_7: 13551843-13556183 Setaria italica
Seita.7G045300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 13551843-13553842 Setaria italica
Seita.7G045300 5.0kb upstream 5.0kb upstream 7341 true scaffold_7: 13553843-13561183 Setaria italica
Seita.7G045300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 13556184-13561183 Setaria italica
Seita.7G045300 5.0kb downstream 5.0kb downstream 7341 true scaffold_7: 13548843-13556183 Setaria italica
Seita.7G045300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 13548843-13553842 Setaria italica
Seita.7G045300 10.0kb upstream 10.0kb upstream 12341 true scaffold_7: 13553843-13566183 Setaria italica
Seita.7G045300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 13556184-13566183 Setaria italica
Seita.7G045300 10.0kb downstream 10.0kb downstream 12341 true scaffold_7: 13543843-13556183 Setaria italica
Seita.7G045300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 13543843-13553842 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197746 5267 Panicoideae View MSA
124569507 5269 Grass View MSA
122050016 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.073        
cufflinks 0.438        
cufflinks 0.048     Low Low
cufflinks 0.512        
cufflinks 9.801       High
cufflinks 0.077     Low Low
cufflinks 20.517     High High
cufflinks 0.921        
cufflinks 39.249     High High
cufflinks 3.025        
cufflinks 1.312        
cufflinks 0.253        
cufflinks 0.113     Low  
cufflinks 6.913        
cufflinks 2.301        
cufflinks 0.038     Low Low
cufflinks 0.278        
cufflinks 0.017     Low Low
cufflinks 1.978        
cufflinks 2.074        

0 Strain