Gene : Seita.7G045700 S. italica v2.2
Defline:  (1 of 1) PTHR11586:SF18 - NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN Genomic Order:  457
Name:  ? Seita.7G045700 Secondary Identifier:  ? PAC:32704288
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G045700 0.5kb upstream 0.5kb upstream 2516 true scaffold_7: 13694357-13696872 Setaria italica
Seita.7G045700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 13694357-13694856 Setaria italica
Seita.7G045700 0.5kb downstream 0.5kb downstream 2516 true scaffold_7: 13694857-13697372 Setaria italica
Seita.7G045700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 13696873-13697372 Setaria italica
Seita.7G045700 1.0kb upstream 1.0kb upstream 3016 true scaffold_7: 13693857-13696872 Setaria italica
Seita.7G045700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 13693857-13694856 Setaria italica
Seita.7G045700 1.0kb downstream 1.0kb downstream 3016 true scaffold_7: 13694857-13697872 Setaria italica
Seita.7G045700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 13696873-13697872 Setaria italica
Seita.7G045700 2.0kb upstream 2.0kb upstream 4016 true scaffold_7: 13692857-13696872 Setaria italica
Seita.7G045700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 13692857-13694856 Setaria italica
Seita.7G045700 2.0kb downstream 2.0kb downstream 4016 true scaffold_7: 13694857-13698872 Setaria italica
Seita.7G045700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 13696873-13698872 Setaria italica
Seita.7G045700 5.0kb upstream 5.0kb upstream 7016 true scaffold_7: 13689857-13696872 Setaria italica
Seita.7G045700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 13689857-13694856 Setaria italica
Seita.7G045700 5.0kb downstream 5.0kb downstream 7016 true scaffold_7: 13694857-13701872 Setaria italica
Seita.7G045700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 13696873-13701872 Setaria italica
Seita.7G045700 10.0kb upstream 10.0kb upstream 12016 true scaffold_7: 13684857-13696872 Setaria italica
Seita.7G045700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 13684857-13694856 Setaria italica
Seita.7G045700 10.0kb downstream 10.0kb downstream 12016 true scaffold_7: 13694857-13706872 Setaria italica
Seita.7G045700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 13696873-13706872 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178382 5267 Panicoideae View MSA
124568725 5269 Grass View MSA
122045155 5273 Angiosperm View MSA
121346605 5274 Embryophyte View MSA
123427531 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.268        
cufflinks 6.012        
cufflinks 3.46       Low
cufflinks 2.276       Low
cufflinks 7.041        
cufflinks 6.137        
cufflinks 9.999        
cufflinks 29.039     High High
cufflinks 25.632     High High
cufflinks 14.164       High
cufflinks 6.362        
cufflinks 6.744        
cufflinks 4.464        
cufflinks 7.853        
cufflinks 4.946        
cufflinks 6.954        
cufflinks 7.891        
cufflinks 2.761       Low
cufflinks 5.483        
cufflinks 7.088        

0 Strain