Gene : Seita.7G050100 S. italica v2.2
Defline:  (1 of 2) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Genomic Order:  501
Name:  ? Seita.7G050100 Secondary Identifier:  ? PAC:32704133
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6829 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G050100 0.5kb upstream 0.5kb upstream 6993 true scaffold_7: 14480654-14487646 Setaria italica
Seita.7G050100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 14480654-14481153 Setaria italica
Seita.7G050100 0.5kb downstream 0.5kb downstream 6993 true scaffold_7: 14481154-14488146 Setaria italica
Seita.7G050100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 14487647-14488146 Setaria italica
Seita.7G050100 1.0kb upstream 1.0kb upstream 7493 true scaffold_7: 14480154-14487646 Setaria italica
Seita.7G050100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 14480154-14481153 Setaria italica
Seita.7G050100 1.0kb downstream 1.0kb downstream 7493 true scaffold_7: 14481154-14488646 Setaria italica
Seita.7G050100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 14487647-14488646 Setaria italica
Seita.7G050100 2.0kb upstream 2.0kb upstream 8493 true scaffold_7: 14479154-14487646 Setaria italica
Seita.7G050100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 14479154-14481153 Setaria italica
Seita.7G050100 2.0kb downstream 2.0kb downstream 8493 true scaffold_7: 14481154-14489646 Setaria italica
Seita.7G050100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 14487647-14489646 Setaria italica
Seita.7G050100 5.0kb upstream 5.0kb upstream 11493 true scaffold_7: 14476154-14487646 Setaria italica
Seita.7G050100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 14476154-14481153 Setaria italica
Seita.7G050100 5.0kb downstream 5.0kb downstream 11493 true scaffold_7: 14481154-14492646 Setaria italica
Seita.7G050100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 14487647-14492646 Setaria italica
Seita.7G050100 10.0kb upstream 10.0kb upstream 16493 true scaffold_7: 14471154-14487646 Setaria italica
Seita.7G050100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 14471154-14481153 Setaria italica
Seita.7G050100 10.0kb downstream 10.0kb downstream 16493 true scaffold_7: 14481154-14497646 Setaria italica
Seita.7G050100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 14487647-14497646 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186716 5267 Panicoideae View MSA
124583241 5269 Grass View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.151        
cufflinks 1.756        
cufflinks 0.374        
cufflinks 0.062     Low Low
cufflinks 0.26       Low
cufflinks 1.575        
cufflinks 0.642        
cufflinks 1.148        
cufflinks 1.327        
cufflinks 2.515       High
cufflinks 1.124        
cufflinks 0.774        
cufflinks 0.572        
cufflinks 1.013        
cufflinks 1.221        
cufflinks 0.393        
cufflinks 1.378        
cufflinks 0.403        
cufflinks 0.121       Low
cufflinks 1.198        

0 Strain