Gene : Seita.7G067100 S. italica v2.2
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  671
Name:  ? Seita.7G067100 Secondary Identifier:  ? PAC:32702412
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G067100 0.5kb upstream 0.5kb upstream 3674 true scaffold_7: 17021246-17024919 Setaria italica
Seita.7G067100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 17021246-17021745 Setaria italica
Seita.7G067100 0.5kb downstream 0.5kb downstream 3674 true scaffold_7: 17021746-17025419 Setaria italica
Seita.7G067100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 17024920-17025419 Setaria italica
Seita.7G067100 1.0kb upstream 1.0kb upstream 4174 true scaffold_7: 17020746-17024919 Setaria italica
Seita.7G067100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 17020746-17021745 Setaria italica
Seita.7G067100 1.0kb downstream 1.0kb downstream 4174 true scaffold_7: 17021746-17025919 Setaria italica
Seita.7G067100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 17024920-17025919 Setaria italica
Seita.7G067100 2.0kb upstream 2.0kb upstream 5174 true scaffold_7: 17019746-17024919 Setaria italica
Seita.7G067100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 17019746-17021745 Setaria italica
Seita.7G067100 2.0kb downstream 2.0kb downstream 5174 true scaffold_7: 17021746-17026919 Setaria italica
Seita.7G067100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 17024920-17026919 Setaria italica
Seita.7G067100 5.0kb upstream 5.0kb upstream 8174 true scaffold_7: 17016746-17024919 Setaria italica
Seita.7G067100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 17016746-17021745 Setaria italica
Seita.7G067100 5.0kb downstream 5.0kb downstream 8174 true scaffold_7: 17021746-17029919 Setaria italica
Seita.7G067100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 17024920-17029919 Setaria italica
Seita.7G067100 10.0kb upstream 10.0kb upstream 13174 true scaffold_7: 17011746-17024919 Setaria italica
Seita.7G067100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 17011746-17021745 Setaria italica
Seita.7G067100 10.0kb downstream 10.0kb downstream 13174 true scaffold_7: 17021746-17034919 Setaria italica
Seita.7G067100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 17024920-17034919 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185269 5267 Panicoideae View MSA
124573617 5269 Grass View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.525     High  
cufflinks 11.589       Low
cufflinks 42.986     High High
cufflinks 42.361     High High
cufflinks 28.819     High  
cufflinks 13.381     High  
cufflinks 16.85     High  
cufflinks 15.635     High  
cufflinks 10.368       Low
cufflinks 12.729        
cufflinks 21.218     High  
cufflinks 20.38     High  
cufflinks 37.989     High High
cufflinks 30.206     High  
cufflinks 37.428     High High
cufflinks 8.533       Low
cufflinks 31.348     High  
cufflinks 11.502     High Low
cufflinks 25.854     High  
cufflinks 26.214     High  

0 Strain