Gene : Seita.7G072600 S. italica v2.2
Defline:  (1 of 2) PF04359 - Protein of unknown function (DUF493) (DUF493) Genomic Order:  726
Name:  ? Seita.7G072600 Secondary Identifier:  ? PAC:32703716
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G072600 0.5kb upstream 0.5kb upstream 3656 true scaffold_7: 17644880-17648535 Setaria italica
Seita.7G072600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 17644880-17645379 Setaria italica
Seita.7G072600 0.5kb downstream 0.5kb downstream 3656 true scaffold_7: 17645380-17649035 Setaria italica
Seita.7G072600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 17648536-17649035 Setaria italica
Seita.7G072600 1.0kb upstream 1.0kb upstream 4156 true scaffold_7: 17644380-17648535 Setaria italica
Seita.7G072600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 17644380-17645379 Setaria italica
Seita.7G072600 1.0kb downstream 1.0kb downstream 4156 true scaffold_7: 17645380-17649535 Setaria italica
Seita.7G072600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 17648536-17649535 Setaria italica
Seita.7G072600 2.0kb upstream 2.0kb upstream 5156 true scaffold_7: 17643380-17648535 Setaria italica
Seita.7G072600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 17643380-17645379 Setaria italica
Seita.7G072600 2.0kb downstream 2.0kb downstream 5156 true scaffold_7: 17645380-17650535 Setaria italica
Seita.7G072600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 17648536-17650535 Setaria italica
Seita.7G072600 5.0kb upstream 5.0kb upstream 8156 true scaffold_7: 17640380-17648535 Setaria italica
Seita.7G072600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 17640380-17645379 Setaria italica
Seita.7G072600 5.0kb downstream 5.0kb downstream 8156 true scaffold_7: 17645380-17653535 Setaria italica
Seita.7G072600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 17648536-17653535 Setaria italica
Seita.7G072600 10.0kb upstream 10.0kb upstream 13156 true scaffold_7: 17635380-17648535 Setaria italica
Seita.7G072600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 17635380-17645379 Setaria italica
Seita.7G072600 10.0kb downstream 10.0kb downstream 13156 true scaffold_7: 17645380-17658535 Setaria italica
Seita.7G072600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 17648536-17658535 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194037 5267 Panicoideae View MSA
124588166 5269 Grass View MSA
122048054 5273 Angiosperm View MSA
121348978 5274 Embryophyte View MSA
123426420 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.49        
cufflinks 3.5        
cufflinks 21.25     High High
cufflinks 21.507     High High
cufflinks 16.453     High High
cufflinks 4.085        
cufflinks 7.059        
cufflinks 16.988     High High
cufflinks 10.796        
cufflinks 3.529        
cufflinks 2.059       Low
cufflinks 2.895        
cufflinks 2.36        
cufflinks 19.22     High High
cufflinks 1.051       Low
cufflinks 7.305        
cufflinks 3.068        
cufflinks 5.716        
cufflinks 17.478     High High
cufflinks 1.62       Low

0 Strain