Gene : Seita.7G157300 S. italica v2.2
Defline:  (1 of 2) PTHR12294 - EF HAND DOMAIN FAMILY A1,A2-RELATED Genomic Order:  1573
Name:  ? Seita.7G157300 Secondary Identifier:  ? PAC:32704032
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G157300 0.5kb upstream 0.5kb upstream 4443 true scaffold_7: 24213361-24217803 Setaria italica
Seita.7G157300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 24213361-24213860 Setaria italica
Seita.7G157300 0.5kb downstream 0.5kb downstream 4443 true scaffold_7: 24213861-24218303 Setaria italica
Seita.7G157300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 24217804-24218303 Setaria italica
Seita.7G157300 1.0kb upstream 1.0kb upstream 4943 true scaffold_7: 24212861-24217803 Setaria italica
Seita.7G157300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 24212861-24213860 Setaria italica
Seita.7G157300 1.0kb downstream 1.0kb downstream 4943 true scaffold_7: 24213861-24218803 Setaria italica
Seita.7G157300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 24217804-24218803 Setaria italica
Seita.7G157300 2.0kb upstream 2.0kb upstream 5943 true scaffold_7: 24211861-24217803 Setaria italica
Seita.7G157300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 24211861-24213860 Setaria italica
Seita.7G157300 2.0kb downstream 2.0kb downstream 5943 true scaffold_7: 24213861-24219803 Setaria italica
Seita.7G157300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 24217804-24219803 Setaria italica
Seita.7G157300 5.0kb upstream 5.0kb upstream 8943 true scaffold_7: 24208861-24217803 Setaria italica
Seita.7G157300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 24208861-24213860 Setaria italica
Seita.7G157300 5.0kb downstream 5.0kb downstream 8943 true scaffold_7: 24213861-24222803 Setaria italica
Seita.7G157300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 24217804-24222803 Setaria italica
Seita.7G157300 10.0kb upstream 10.0kb upstream 13943 true scaffold_7: 24203861-24217803 Setaria italica
Seita.7G157300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 24203861-24213860 Setaria italica
Seita.7G157300 10.0kb downstream 10.0kb downstream 13943 true scaffold_7: 24213861-24227803 Setaria italica
Seita.7G157300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 24217804-24227803 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122054730 5267 Panicoideae Singleton cluster - no MSA
124354544 5269 Grass Singleton cluster - no MSA
122041646 5273 Angiosperm View MSA
121347886 5274 Embryophyte View MSA
123424828 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.097        
cufflinks 7.436       Low
cufflinks 28.224     High High
cufflinks 28.995     High High
cufflinks 13.664     High  
cufflinks 7.761       Low
cufflinks 10.571        
cufflinks 10.003        
cufflinks 7.185       Low
cufflinks 9.423        
cufflinks 8.481        
cufflinks 29.155     High High
cufflinks 12.478        
cufflinks 10.816        
cufflinks 8.985        
cufflinks 11.365        
cufflinks 18.928     High  
cufflinks 15.299     High  
cufflinks 20.875     High High
cufflinks 15.142     High  

0 Strain