Gene : Seita.7G157100 S. italica v2.2
Defline:  (1 of 3) PTHR10744//PTHR10744:SF10 - 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Genomic Order:  1571
Name:  ? Seita.7G157100 Secondary Identifier:  ? PAC:32703172
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G157100 0.5kb upstream 0.5kb upstream 2811 true scaffold_7: 24180980-24183790 Setaria italica
Seita.7G157100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 24183291-24183790 Setaria italica
Seita.7G157100 0.5kb downstream 0.5kb downstream 2811 true scaffold_7: 24180480-24183290 Setaria italica
Seita.7G157100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 24180480-24180979 Setaria italica
Seita.7G157100 1.0kb upstream 1.0kb upstream 3311 true scaffold_7: 24180980-24184290 Setaria italica
Seita.7G157100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 24183291-24184290 Setaria italica
Seita.7G157100 1.0kb downstream 1.0kb downstream 3311 true scaffold_7: 24179980-24183290 Setaria italica
Seita.7G157100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 24179980-24180979 Setaria italica
Seita.7G157100 2.0kb upstream 2.0kb upstream 4311 true scaffold_7: 24180980-24185290 Setaria italica
Seita.7G157100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 24183291-24185290 Setaria italica
Seita.7G157100 2.0kb downstream 2.0kb downstream 4311 true scaffold_7: 24178980-24183290 Setaria italica
Seita.7G157100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 24178980-24180979 Setaria italica
Seita.7G157100 5.0kb upstream 5.0kb upstream 7311 true scaffold_7: 24180980-24188290 Setaria italica
Seita.7G157100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 24183291-24188290 Setaria italica
Seita.7G157100 5.0kb downstream 5.0kb downstream 7311 true scaffold_7: 24175980-24183290 Setaria italica
Seita.7G157100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 24175980-24180979 Setaria italica
Seita.7G157100 10.0kb upstream 10.0kb upstream 12311 true scaffold_7: 24180980-24193290 Setaria italica
Seita.7G157100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 24183291-24193290 Setaria italica
Seita.7G157100 10.0kb downstream 10.0kb downstream 12311 true scaffold_7: 24170980-24183290 Setaria italica
Seita.7G157100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 24170980-24180979 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122200031 5267 Panicoideae View MSA
124580462 5269 Grass View MSA
122044220 5273 Angiosperm View MSA
121344694 5274 Embryophyte View MSA
123428242 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.596     High  
cufflinks 39.99     High  
cufflinks 13.239     High Low
cufflinks 12.16     High Low
cufflinks 15.105     High Low
cufflinks 42.059     High  
cufflinks 31.545     High  
cufflinks 70.156     High High
cufflinks 55.568     High  
cufflinks 81.444     High High
cufflinks 41.944     High  
cufflinks 56.868     High  
cufflinks 36.903     High  
cufflinks 23.333     High  
cufflinks 50.476     High  
cufflinks 26.392     High  
cufflinks 75.863     High High
cufflinks 24.33     High  
cufflinks 15.625     High Low
cufflinks 61.695     High  

0 Strain