Gene : Seita.7G157400 S. italica v2.2
Defline:  (1 of 2) PTHR24006:SF451 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE Genomic Order:  1574
Name:  ? Seita.7G157400 Secondary Identifier:  ? PAC:32705945
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G157400 0.5kb upstream 0.5kb upstream 7123 true scaffold_7: 24218183-24225305 Setaria italica
Seita.7G157400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 24224806-24225305 Setaria italica
Seita.7G157400 0.5kb downstream 0.5kb downstream 7123 true scaffold_7: 24217683-24224805 Setaria italica
Seita.7G157400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 24217683-24218182 Setaria italica
Seita.7G157400 1.0kb upstream 1.0kb upstream 7623 true scaffold_7: 24218183-24225805 Setaria italica
Seita.7G157400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 24224806-24225805 Setaria italica
Seita.7G157400 1.0kb downstream 1.0kb downstream 7623 true scaffold_7: 24217183-24224805 Setaria italica
Seita.7G157400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 24217183-24218182 Setaria italica
Seita.7G157400 2.0kb upstream 2.0kb upstream 8623 true scaffold_7: 24218183-24226805 Setaria italica
Seita.7G157400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 24224806-24226805 Setaria italica
Seita.7G157400 2.0kb downstream 2.0kb downstream 8623 true scaffold_7: 24216183-24224805 Setaria italica
Seita.7G157400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 24216183-24218182 Setaria italica
Seita.7G157400 5.0kb upstream 5.0kb upstream 11623 true scaffold_7: 24218183-24229805 Setaria italica
Seita.7G157400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 24224806-24229805 Setaria italica
Seita.7G157400 5.0kb downstream 5.0kb downstream 11623 true scaffold_7: 24213183-24224805 Setaria italica
Seita.7G157400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 24213183-24218182 Setaria italica
Seita.7G157400 10.0kb upstream 10.0kb upstream 16623 true scaffold_7: 24218183-24234805 Setaria italica
Seita.7G157400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 24224806-24234805 Setaria italica
Seita.7G157400 10.0kb downstream 10.0kb downstream 16623 true scaffold_7: 24208183-24224805 Setaria italica
Seita.7G157400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 24208183-24218182 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181050 5267 Panicoideae View MSA
124580349 5269 Grass View MSA
122042006 5273 Angiosperm View MSA
123428966 5275 Viridiplantae View MSA
121344992 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.039     High  
cufflinks 13.41     High Low
cufflinks 86.9     High High
cufflinks 87.781     High High
cufflinks 35.908     High  
cufflinks 15.871     High Low
cufflinks 35.385     High  
cufflinks 26.825     High  
cufflinks 13.939     High Low
cufflinks 20.117     High  
cufflinks 33.862     High  
cufflinks 31.508     High  
cufflinks 58.797     High  
cufflinks 34.789     High  
cufflinks 30.808     High  
cufflinks 65.14     High High
cufflinks 27.877     High  
cufflinks 61.752     High High
cufflinks 50.952     High  
cufflinks 26.403     High  

0 Strain