Gene : Seita.7G171400 S. italica v2.2
Defline:  (1 of 6) PF05757 - Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ) Genomic Order:  1714
Name:  ? Seita.7G171400 Secondary Identifier:  ? PAC:32705904
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G171400 0.5kb upstream 0.5kb upstream 2011 true scaffold_7: 25295331-25297341 Setaria italica
Seita.7G171400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 25295331-25295830 Setaria italica
Seita.7G171400 0.5kb downstream 0.5kb downstream 2011 true scaffold_7: 25295831-25297841 Setaria italica
Seita.7G171400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 25297342-25297841 Setaria italica
Seita.7G171400 1.0kb upstream 1.0kb upstream 2511 true scaffold_7: 25294831-25297341 Setaria italica
Seita.7G171400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 25294831-25295830 Setaria italica
Seita.7G171400 1.0kb downstream 1.0kb downstream 2511 true scaffold_7: 25295831-25298341 Setaria italica
Seita.7G171400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 25297342-25298341 Setaria italica
Seita.7G171400 2.0kb upstream 2.0kb upstream 3511 true scaffold_7: 25293831-25297341 Setaria italica
Seita.7G171400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 25293831-25295830 Setaria italica
Seita.7G171400 2.0kb downstream 2.0kb downstream 3511 true scaffold_7: 25295831-25299341 Setaria italica
Seita.7G171400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 25297342-25299341 Setaria italica
Seita.7G171400 5.0kb upstream 5.0kb upstream 6511 true scaffold_7: 25290831-25297341 Setaria italica
Seita.7G171400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 25290831-25295830 Setaria italica
Seita.7G171400 5.0kb downstream 5.0kb downstream 6511 true scaffold_7: 25295831-25302341 Setaria italica
Seita.7G171400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 25297342-25302341 Setaria italica
Seita.7G171400 10.0kb upstream 10.0kb upstream 11511 true scaffold_7: 25285831-25297341 Setaria italica
Seita.7G171400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 25285831-25295830 Setaria italica
Seita.7G171400 10.0kb downstream 10.0kb downstream 11511 true scaffold_7: 25295831-25307341 Setaria italica
Seita.7G171400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 25297342-25307341 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188224 5267 Panicoideae View MSA
124569020 5269 Grass View MSA
122049164 5273 Angiosperm View MSA
121311275 5274 Embryophyte View MSA
123348590 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.009        
cufflinks 0.503        
cufflinks 0.405        
cufflinks 0.195        
cufflinks 1.369        
cufflinks 0.664        
cufflinks 2.533       High
cufflinks 2.694       High
cufflinks 4.913       High
cufflinks 2.0        
cufflinks 0.49        
cufflinks 0.032     Low Low
cufflinks 0.045     Low Low
cufflinks 0.699        
cufflinks 0.048     Low Low
cufflinks 2.714       High
cufflinks 0.011     Low Low
cufflinks 0.842        
cufflinks 0.413        
cufflinks 0.034     Low Low

0 Strain