Gene : Seita.7G177500 S. italica v2.2
Defline:  (1 of 1) PTHR12879 - SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2 Genomic Order:  1775
Name:  ? Seita.7G177500 Secondary Identifier:  ? PAC:32703837
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G177500 0.5kb upstream 0.5kb upstream 3613 true scaffold_7: 25687872-25691484 Setaria italica
Seita.7G177500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 25687872-25688371 Setaria italica
Seita.7G177500 0.5kb downstream 0.5kb downstream 3613 true scaffold_7: 25688372-25691984 Setaria italica
Seita.7G177500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 25691485-25691984 Setaria italica
Seita.7G177500 1.0kb upstream 1.0kb upstream 4113 true scaffold_7: 25687372-25691484 Setaria italica
Seita.7G177500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 25687372-25688371 Setaria italica
Seita.7G177500 1.0kb downstream 1.0kb downstream 4113 true scaffold_7: 25688372-25692484 Setaria italica
Seita.7G177500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 25691485-25692484 Setaria italica
Seita.7G177500 2.0kb upstream 2.0kb upstream 5113 true scaffold_7: 25686372-25691484 Setaria italica
Seita.7G177500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 25686372-25688371 Setaria italica
Seita.7G177500 2.0kb downstream 2.0kb downstream 5113 true scaffold_7: 25688372-25693484 Setaria italica
Seita.7G177500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 25691485-25693484 Setaria italica
Seita.7G177500 5.0kb upstream 5.0kb upstream 8113 true scaffold_7: 25683372-25691484 Setaria italica
Seita.7G177500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 25683372-25688371 Setaria italica
Seita.7G177500 5.0kb downstream 5.0kb downstream 8113 true scaffold_7: 25688372-25696484 Setaria italica
Seita.7G177500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 25691485-25696484 Setaria italica
Seita.7G177500 10.0kb upstream 10.0kb upstream 13113 true scaffold_7: 25678372-25691484 Setaria italica
Seita.7G177500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 25678372-25688371 Setaria italica
Seita.7G177500 10.0kb downstream 10.0kb downstream 13113 true scaffold_7: 25688372-25701484 Setaria italica
Seita.7G177500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 25691485-25701484 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178431 5267 Panicoideae View MSA
124571873 5269 Grass View MSA
122048709 5273 Angiosperm View MSA
121348431 5274 Embryophyte View MSA
123425717 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.506        
cufflinks 7.502        
cufflinks 0.102       Low
cufflinks 0.088       Low
cufflinks 1.084        
cufflinks 8.404        
cufflinks 4.244        
cufflinks 4.977        
cufflinks 3.812        
cufflinks 11.392        
cufflinks 8.035        
cufflinks 4.567        
cufflinks 3.279        
cufflinks 0.035     Low Low
cufflinks 7.982        
cufflinks 1.425        
cufflinks 7.422        
cufflinks 0.512        
cufflinks 0.231       Low
cufflinks 8.593        

0 Strain