Gene : Seita.7G184500 S. italica v2.2
Defline:  (1 of 2) PTHR12358//PTHR12358:SF39 - SPHINGOSINE KINASE Genomic Order:  1845
Name:  ? Seita.7G184500 Secondary Identifier:  ? PAC:32702898
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5129 Setaria italica pathologic  
Sitalica PWY-6483 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G184500 0.5kb upstream 0.5kb upstream 7115 true scaffold_7: 26194414-26201528 Setaria italica
Seita.7G184500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 26194414-26194913 Setaria italica
Seita.7G184500 0.5kb downstream 0.5kb downstream 7115 true scaffold_7: 26194914-26202028 Setaria italica
Seita.7G184500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 26201529-26202028 Setaria italica
Seita.7G184500 1.0kb upstream 1.0kb upstream 7615 true scaffold_7: 26193914-26201528 Setaria italica
Seita.7G184500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 26193914-26194913 Setaria italica
Seita.7G184500 1.0kb downstream 1.0kb downstream 7615 true scaffold_7: 26194914-26202528 Setaria italica
Seita.7G184500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 26201529-26202528 Setaria italica
Seita.7G184500 2.0kb upstream 2.0kb upstream 8615 true scaffold_7: 26192914-26201528 Setaria italica
Seita.7G184500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 26192914-26194913 Setaria italica
Seita.7G184500 2.0kb downstream 2.0kb downstream 8615 true scaffold_7: 26194914-26203528 Setaria italica
Seita.7G184500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 26201529-26203528 Setaria italica
Seita.7G184500 5.0kb upstream 5.0kb upstream 11615 true scaffold_7: 26189914-26201528 Setaria italica
Seita.7G184500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 26189914-26194913 Setaria italica
Seita.7G184500 5.0kb downstream 5.0kb downstream 11615 true scaffold_7: 26194914-26206528 Setaria italica
Seita.7G184500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 26201529-26206528 Setaria italica
Seita.7G184500 10.0kb upstream 10.0kb upstream 16615 true scaffold_7: 26184914-26201528 Setaria italica
Seita.7G184500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 26184914-26194913 Setaria italica
Seita.7G184500 10.0kb downstream 10.0kb downstream 16615 true scaffold_7: 26194914-26211528 Setaria italica
Seita.7G184500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 26201529-26211528 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183435 5267 Panicoideae View MSA
124569465 5269 Grass View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.962        
cufflinks 8.081        
cufflinks 1.79       Low
cufflinks 1.485       Low
cufflinks 1.26       Low
cufflinks 8.648        
cufflinks 4.299        
cufflinks 2.446        
cufflinks 2.411        
cufflinks 6.284        
cufflinks 7.234        
cufflinks 16.309     High High
cufflinks 9.247        
cufflinks 1.84       Low
cufflinks 8.738        
cufflinks 5.13        
cufflinks 8.546        
cufflinks 15.771     High High
cufflinks 2.252        
cufflinks 8.421        

0 Strain