Gene : Seita.7G113800 S. italica v2.2
Defline:  (1 of 1) PTHR11999//PTHR11999:SF81 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE Genomic Order:  1138
Name:  ? Seita.7G113800 Secondary Identifier:  ? PAC:32705499
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1305 Setaria italica pathologic  
Sitalica PWY-4321 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G113800 0.5kb upstream 0.5kb upstream 2867 true scaffold_7: 21265800-21268666 Setaria italica
Seita.7G113800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 21268167-21268666 Setaria italica
Seita.7G113800 0.5kb downstream 0.5kb downstream 2867 true scaffold_7: 21265300-21268166 Setaria italica
Seita.7G113800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 21265300-21265799 Setaria italica
Seita.7G113800 1.0kb upstream 1.0kb upstream 3367 true scaffold_7: 21265800-21269166 Setaria italica
Seita.7G113800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 21268167-21269166 Setaria italica
Seita.7G113800 1.0kb downstream 1.0kb downstream 3367 true scaffold_7: 21264800-21268166 Setaria italica
Seita.7G113800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 21264800-21265799 Setaria italica
Seita.7G113800 2.0kb upstream 2.0kb upstream 4367 true scaffold_7: 21265800-21270166 Setaria italica
Seita.7G113800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 21268167-21270166 Setaria italica
Seita.7G113800 2.0kb downstream 2.0kb downstream 4367 true scaffold_7: 21263800-21268166 Setaria italica
Seita.7G113800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 21263800-21265799 Setaria italica
Seita.7G113800 5.0kb upstream 5.0kb upstream 7367 true scaffold_7: 21265800-21273166 Setaria italica
Seita.7G113800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 21268167-21273166 Setaria italica
Seita.7G113800 5.0kb downstream 5.0kb downstream 7367 true scaffold_7: 21260800-21268166 Setaria italica
Seita.7G113800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 21260800-21265799 Setaria italica
Seita.7G113800 10.0kb upstream 10.0kb upstream 12367 true scaffold_7: 21265800-21278166 Setaria italica
Seita.7G113800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 21268167-21278166 Setaria italica
Seita.7G113800 10.0kb downstream 10.0kb downstream 12367 true scaffold_7: 21255800-21268166 Setaria italica
Seita.7G113800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 21255800-21265799 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175563 5267 Panicoideae View MSA
124577690 5269 Grass View MSA
122050334 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.131     Low  
cufflinks 0.126        
cufflinks 0.153        
cufflinks 0.053     Low  
cufflinks 0.126        
cufflinks 0.899       High
cufflinks 0.024     Low Low
cufflinks 0.073     Low  
cufflinks 0.085     Low  
cufflinks 0.092     Low  
cufflinks 0.105     Low  
cufflinks 0.147        
cufflinks 0.227        
cufflinks 0.37       High
cufflinks 0.313        
cufflinks 0.025     Low Low
cufflinks 0.225        
cufflinks 0.007     Low Low
cufflinks 0.116        
cufflinks 0.356       High

0 Strain