Gene : Seita.7G112600 S. italica v2.2
Defline:  (1 of 2) PTHR11712//PTHR11712:SF286 - POLYKETIDE SYNTHASE-RELATED Genomic Order:  1126
Name:  ? Seita.7G112600 Secondary Identifier:  ? PAC:32704428
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica FASYN-ELONG-PWY Setaria italica pathologic  
Sitalica PWY-5156 Setaria italica pathologic  
Sitalica PWY-5971 Setaria italica pathologic  
Sitalica PWY-5989 Setaria italica pathologic  
Sitalica PWY-6282 Setaria italica pathologic  
Sitalica PWY-7388 Setaria italica pathologic  
Sitalica PWY-7663 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G112600 0.5kb upstream 0.5kb upstream 4661 true scaffold_7: 21191148-21195808 Setaria italica
Seita.7G112600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 21195309-21195808 Setaria italica
Seita.7G112600 0.5kb downstream 0.5kb downstream 4661 true scaffold_7: 21190648-21195308 Setaria italica
Seita.7G112600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 21190648-21191147 Setaria italica
Seita.7G112600 1.0kb upstream 1.0kb upstream 5161 true scaffold_7: 21191148-21196308 Setaria italica
Seita.7G112600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 21195309-21196308 Setaria italica
Seita.7G112600 1.0kb downstream 1.0kb downstream 5161 true scaffold_7: 21190148-21195308 Setaria italica
Seita.7G112600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 21190148-21191147 Setaria italica
Seita.7G112600 2.0kb upstream 2.0kb upstream 6161 true scaffold_7: 21191148-21197308 Setaria italica
Seita.7G112600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 21195309-21197308 Setaria italica
Seita.7G112600 2.0kb downstream 2.0kb downstream 6161 true scaffold_7: 21189148-21195308 Setaria italica
Seita.7G112600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 21189148-21191147 Setaria italica
Seita.7G112600 5.0kb upstream 5.0kb upstream 9161 true scaffold_7: 21191148-21200308 Setaria italica
Seita.7G112600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 21195309-21200308 Setaria italica
Seita.7G112600 5.0kb downstream 5.0kb downstream 9161 true scaffold_7: 21186148-21195308 Setaria italica
Seita.7G112600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 21186148-21191147 Setaria italica
Seita.7G112600 10.0kb upstream 10.0kb upstream 14161 true scaffold_7: 21191148-21205308 Setaria italica
Seita.7G112600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 21195309-21205308 Setaria italica
Seita.7G112600 10.0kb downstream 10.0kb downstream 14161 true scaffold_7: 21181148-21195308 Setaria italica
Seita.7G112600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 21181148-21191147 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116209 5267 Panicoideae View MSA
124573439 5269 Grass View MSA
122044089 5273 Angiosperm View MSA
121347391 5274 Embryophyte View MSA
123426303 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.166        
cufflinks 3.198        
cufflinks 1.283        
cufflinks 0.459        
cufflinks 3.304        
cufflinks 4.662        
cufflinks 11.067       High
cufflinks 15.911     High High
cufflinks 28.906     High High
cufflinks 2.685        
cufflinks 4.513        
cufflinks 1.271        
cufflinks 0.112     Low Low
cufflinks 4.266        
cufflinks 0.077     Low Low
cufflinks 5.607        
cufflinks 0.096     Low Low
cufflinks 2.623        
cufflinks 0.283        
cufflinks 0.077     Low Low

0 Strain