Gene : Seita.7G116400 S. italica v2.2
Defline:  (1 of 3) PTHR13789:SF245 - ZEAXANTHIN EPOXIDASE, CHLOROPLASTIC Genomic Order:  1164
Name:  ? Seita.7G116400 Secondary Identifier:  ? PAC:32702476
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G116400 0.5kb upstream 0.5kb upstream 7676 true scaffold_7: 21401919-21409594 Setaria italica
Seita.7G116400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 21401919-21402418 Setaria italica
Seita.7G116400 0.5kb downstream 0.5kb downstream 7676 true scaffold_7: 21402419-21410094 Setaria italica
Seita.7G116400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 21409595-21410094 Setaria italica
Seita.7G116400 1.0kb upstream 1.0kb upstream 8176 true scaffold_7: 21401419-21409594 Setaria italica
Seita.7G116400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 21401419-21402418 Setaria italica
Seita.7G116400 1.0kb downstream 1.0kb downstream 8176 true scaffold_7: 21402419-21410594 Setaria italica
Seita.7G116400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 21409595-21410594 Setaria italica
Seita.7G116400 2.0kb upstream 2.0kb upstream 9176 true scaffold_7: 21400419-21409594 Setaria italica
Seita.7G116400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 21400419-21402418 Setaria italica
Seita.7G116400 2.0kb downstream 2.0kb downstream 9176 true scaffold_7: 21402419-21411594 Setaria italica
Seita.7G116400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 21409595-21411594 Setaria italica
Seita.7G116400 5.0kb upstream 5.0kb upstream 12176 true scaffold_7: 21397419-21409594 Setaria italica
Seita.7G116400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 21397419-21402418 Setaria italica
Seita.7G116400 5.0kb downstream 5.0kb downstream 12176 true scaffold_7: 21402419-21414594 Setaria italica
Seita.7G116400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 21409595-21414594 Setaria italica
Seita.7G116400 10.0kb upstream 10.0kb upstream 17176 true scaffold_7: 21392419-21409594 Setaria italica
Seita.7G116400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 21392419-21402418 Setaria italica
Seita.7G116400 10.0kb downstream 10.0kb downstream 17176 true scaffold_7: 21402419-21419594 Setaria italica
Seita.7G116400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 21409595-21419594 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181979 5267 Panicoideae View MSA
124576296 5269 Grass View MSA
122051676 5273 Angiosperm View MSA
123429089 5275 Viridiplantae View MSA
121349162 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.201        
cufflinks 7.299        
cufflinks 99.976     High High
cufflinks 94.436     High High
cufflinks 63.429     High High
cufflinks 5.642        
cufflinks 31.637     High  
cufflinks 29.496     High  
cufflinks 25.803     High  
cufflinks 2.243       Low
cufflinks 2.802       Low
cufflinks 3.484        
cufflinks 3.357        
cufflinks 64.147     High High
cufflinks 2.879       Low
cufflinks 47.212     High  
cufflinks 3.428        
cufflinks 11.188        
cufflinks 89.553     High High
cufflinks 2.076       Low

0 Strain