Gene : Seita.7G121200 S. italica v2.2
Defline:  (1 of 1) PTHR10949:SF0 - LIPOYL SYNTHASE, MITOCHONDRIAL Genomic Order:  1212
Name:  ? Seita.7G121200 Secondary Identifier:  ? PAC:32702664
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-501 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G121200 0.5kb upstream 0.5kb upstream 4365 true scaffold_7: 21752326-21756690 Setaria italica
Seita.7G121200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 21756191-21756690 Setaria italica
Seita.7G121200 0.5kb downstream 0.5kb downstream 4365 true scaffold_7: 21751826-21756190 Setaria italica
Seita.7G121200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 21751826-21752325 Setaria italica
Seita.7G121200 1.0kb upstream 1.0kb upstream 4865 true scaffold_7: 21752326-21757190 Setaria italica
Seita.7G121200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 21756191-21757190 Setaria italica
Seita.7G121200 1.0kb downstream 1.0kb downstream 4865 true scaffold_7: 21751326-21756190 Setaria italica
Seita.7G121200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 21751326-21752325 Setaria italica
Seita.7G121200 2.0kb upstream 2.0kb upstream 5865 true scaffold_7: 21752326-21758190 Setaria italica
Seita.7G121200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 21756191-21758190 Setaria italica
Seita.7G121200 2.0kb downstream 2.0kb downstream 5865 true scaffold_7: 21750326-21756190 Setaria italica
Seita.7G121200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 21750326-21752325 Setaria italica
Seita.7G121200 5.0kb upstream 5.0kb upstream 8865 true scaffold_7: 21752326-21761190 Setaria italica
Seita.7G121200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 21756191-21761190 Setaria italica
Seita.7G121200 5.0kb downstream 5.0kb downstream 8865 true scaffold_7: 21747326-21756190 Setaria italica
Seita.7G121200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 21747326-21752325 Setaria italica
Seita.7G121200 10.0kb upstream 10.0kb upstream 13865 true scaffold_7: 21752326-21766190 Setaria italica
Seita.7G121200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 21756191-21766190 Setaria italica
Seita.7G121200 10.0kb downstream 10.0kb downstream 13865 true scaffold_7: 21742326-21756190 Setaria italica
Seita.7G121200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 21742326-21752325 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180558 5267 Panicoideae View MSA
124572628 5269 Grass View MSA
122045804 5273 Angiosperm View MSA
121345971 5274 Embryophyte View MSA
123424868 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.142        
cufflinks 8.803       Low
cufflinks 8.458       Low
cufflinks 7.955       Low
cufflinks 10.179        
cufflinks 10.332        
cufflinks 10.488        
cufflinks 14.598     High  
cufflinks 14.194     High  
cufflinks 16.586     High High
cufflinks 13.317        
cufflinks 16.73     High High
cufflinks 15.983     High High
cufflinks 8.521       Low
cufflinks 14.945     High  
cufflinks 10.537        
cufflinks 18.57     High High
cufflinks 9.474        
cufflinks 7.189       Low
cufflinks 16.377     High High

0 Strain