Gene : Seita.7G123600 S. italica v2.2
Defline:  (1 of 14) 2.3.1.64 - Agmatine N(4)-coumaroyltransferase / p-coumaroyl-CoA-agmatine N-p-coumaroyltransferase Genomic Order:  1236
Name:  ? Seita.7G123600 Secondary Identifier:  ? PAC:32702379
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G123600 0.5kb upstream 0.5kb upstream 1847 true scaffold_7: 21900197-21902043 Setaria italica
Seita.7G123600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 21900197-21900696 Setaria italica
Seita.7G123600 0.5kb downstream 0.5kb downstream 1847 true scaffold_7: 21900697-21902543 Setaria italica
Seita.7G123600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 21902044-21902543 Setaria italica
Seita.7G123600 1.0kb upstream 1.0kb upstream 2347 true scaffold_7: 21899697-21902043 Setaria italica
Seita.7G123600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 21899697-21900696 Setaria italica
Seita.7G123600 1.0kb downstream 1.0kb downstream 2347 true scaffold_7: 21900697-21903043 Setaria italica
Seita.7G123600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 21902044-21903043 Setaria italica
Seita.7G123600 2.0kb upstream 2.0kb upstream 3347 true scaffold_7: 21898697-21902043 Setaria italica
Seita.7G123600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 21898697-21900696 Setaria italica
Seita.7G123600 2.0kb downstream 2.0kb downstream 3347 true scaffold_7: 21900697-21904043 Setaria italica
Seita.7G123600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 21902044-21904043 Setaria italica
Seita.7G123600 5.0kb upstream 5.0kb upstream 6347 true scaffold_7: 21895697-21902043 Setaria italica
Seita.7G123600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 21895697-21900696 Setaria italica
Seita.7G123600 5.0kb downstream 5.0kb downstream 6347 true scaffold_7: 21900697-21907043 Setaria italica
Seita.7G123600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 21902044-21907043 Setaria italica
Seita.7G123600 10.0kb upstream 10.0kb upstream 11347 true scaffold_7: 21890697-21902043 Setaria italica
Seita.7G123600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 21890697-21900696 Setaria italica
Seita.7G123600 10.0kb downstream 10.0kb downstream 11347 true scaffold_7: 21900697-21912043 Setaria italica
Seita.7G123600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 21902044-21912043 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194408 5267 Panicoideae View MSA
124586548 5269 Grass View MSA
122051149 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.124     Low High
cufflinks 0.031     Low  
cufflinks 0.013     Low Low
cufflinks 0.05     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  

0 Strain